Ricardo Wurmus
901020cdeb
gnu: pigx-scrnaseq: Use Snakemake 5.
...
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace snakemake-7
with snakemake-5.
[arguments]: Set HOME.
Change-Id: I45257e138c4cf468d179ff35b0c705bc73046052
2025-05-12 08:55:51 +02:00
Ricardo Wurmus
d6f9f9b585
gnu: pigx-bsseq: Set HOME.
...
* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Add phase 'pre-check.
Change-Id: Ic88976554e6e7c7955ae9ab4f0232330060446c9
2025-05-12 08:55:50 +02:00
Ricardo Wurmus
c80e1e958b
gnu: pigx-chipseq: Set HOME.
...
* gnu/packages/bioinformatics.scm (pigx-chipseq)[arguments]: Add phase 'pre-check.
Change-Id: Ia95db9209b5ea0cb340f9827197bdcc851266961
2025-05-12 08:55:50 +02:00
Ricardo Wurmus
b0aaf60a38
gnu: pigx-rnaseq: Set HOME.
...
* gnu/packages/bioinformatics.scm (pigx-rnaseq)[arguments]: Add phase 'pre-check.
Change-Id: Ibabfa8f14b8eaec6d25ae72a2cd0f33e6a7d2819
2025-05-12 08:55:50 +02:00
Ricardo Wurmus
f54467968d
gnu: r-tradeseq: Add missing input.
...
* gnu/packages/bioconductor.scm (r-tradeseq)[native-inputs]: Add
r-delayedmatrixstats.
[properties]: Record it in updater-extra-native-inputs.
Change-Id: Icc877a48320083d2e5c4987643d52d60c9b11f05
2025-05-12 08:55:50 +02:00
Ricardo Wurmus
3f3b2e31a8
gnu: r-screpertoire: Disable one more test.
...
* gnu/packages/bioconductor.scm (r-screpertoire)[arguments]: Disable one more test.
Change-Id: I9d44fc50137f6e90f69a2e871a375aff192045ae
2025-05-12 08:55:50 +02:00
Ricardo Wurmus
73be836f25
gnu: r-duckdb: Disable tests.
...
* gnu/packages/cran.scm (r-duckdb)[arguments]: Disable tests.
Change-Id: I046fe9e9fb34f35c9f2fcaa6bbb726fb4bbfd81c
2025-05-12 08:55:50 +02:00
Ricardo Wurmus
1ae270f125
gnu: r-scdd: Add missing input.
...
* gnu/packages/bioconductor.scm (r-scdd)[properties]: Record
updater-extra-native-inputs.
[native-inputs]: Add r-testthat.
Change-Id: Ibd0925b94ae82145055a0b2c5d53f38df202b077
2025-05-12 08:55:50 +02:00
Ricardo Wurmus
d05e09fb61
gnu: pigx-sars-cov-2: Use Snakemake 7.
...
* gnu/packages/bioinformatics.scm (pigx-sars-cov-2)[inputs]: Replace snakemake
with snakemake-7.
Change-Id: I059ea25c0e4a45e42f8f288cd92f548b9684e624
2025-05-12 08:55:50 +02:00
Ricardo Wurmus
fdc8303a27
gnu: pigx-scrnaseq: Use Snakemake 7.
...
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace snakemake
with snakemake-7.
Change-Id: I9b903dba192e862d3b5b6ca4e0018ed88069937d
2025-05-12 08:55:49 +02:00
Ricardo Wurmus
150ecd1579
gnu: pigx-bsseq: Use Snakemake 7.
...
* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace snakemake
with snakemake-7.
Change-Id: If82236f94d46c8e1f7f325e6eaf76f68397218d1
2025-05-12 08:55:49 +02:00
Ricardo Wurmus
c43c9f9849
gnu: pigx-chipseq: Use Snakemake 7.
...
* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace snakemake
with snakemake-7.
Change-Id: Ib4d7d95713be3535b44ad10b655cf1a217048121
2025-05-12 08:55:49 +02:00
Ricardo Wurmus
46ccde1476
gnu: pigx-rnaseq: Use Snakemake 7.
...
* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Replace snakemake
with snakemake-7.
Change-Id: I2ab8af1438b59c3d36951b5901aeb57039b4aafc
2025-05-12 08:55:49 +02:00
Ricardo Wurmus
d21eb7129e
gnu: r-automap: Update to 1.1-16.
...
* gnu/packages/cran.scm (r-automap): Update to 1.1-16.
Change-Id: Id03925a9a292d8761facc8174e4a7baa854209d0
2025-05-12 08:55:49 +02:00
Ricardo Wurmus
06a85865b0
gnu: r-spacefillr: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-spacefillr): Update to 0.4.0.
Change-Id: I313d740322b991ce5aacaa5d7177d49f2b25bc25
2025-05-12 08:55:49 +02:00
Ricardo Wurmus
dbf27f8254
gnu: r-mathjaxr: Update to 1.8-0.
...
* gnu/packages/cran.scm (r-mathjaxr): Update to 1.8-0.
Change-Id: I1c4286b47602493facbbe72a914319df15b05e86
2025-05-12 08:55:49 +02:00
Ricardo Wurmus
030f024fbf
gnu: r-vgam: Update to 1.1-13.
...
* gnu/packages/cran.scm (r-vgam): Update to 1.1-13.
Change-Id: Ief01a8634a55b6387e767166a0e146d2d151dbf8
2025-05-12 08:55:49 +02:00
Ricardo Wurmus
693476b135
gnu: r-zoltr: Update to 1.0.2.
...
* gnu/packages/cran.scm (r-zoltr): Update to 1.0.2.
[native-inputs]: Add r-devtools.
Change-Id: If358691f354a2d32a79002a7833e57483f63a916
2025-05-12 08:55:49 +02:00
Ricardo Wurmus
2142f563f2
gnu: r-zonebuilder: Update to 0.1.0.
...
* gnu/packages/cran.scm (r-zonebuilder): Update to 0.1.0.
Change-Id: If5875def520050b5adfa6fe1c6443979a9646b24
2025-05-12 08:55:48 +02:00
Ricardo Wurmus
56de997fa1
gnu: r-paws: Update to 0.9.0.
...
* gnu/packages/cran.scm (r-paws): Update to 0.9.0.
Change-Id: I4a115b73bfa89ba18c4ee1b4dec4777b383fc35d
2025-05-12 08:55:48 +02:00
Ricardo Wurmus
8f593ec87c
gnu: r-paws-compute: Update to 0.9.0.
...
* gnu/packages/cran.scm (r-paws-compute): Update to 0.9.0.
Change-Id: I41716a54b9fb69fca298d2a516b5461970414caf
2025-05-12 08:55:48 +02:00
Ricardo Wurmus
cf4ab5e416
gnu: r-paws-storage: Update to 0.9.0.
...
* gnu/packages/cran.scm (r-paws-storage): Update to 0.9.0.
Change-Id: Iee12b7a726eb1a09729d307a54a55f57acc4b191
2025-05-12 08:55:48 +02:00
Ricardo Wurmus
f6d49bd518
gnu: r-paws-database: Update to 0.9.0.
...
* gnu/packages/cran.scm (r-paws-database): Update to 0.9.0.
Change-Id: I5bf56853d9984abece401cc7909d4e8db5138b5a
2025-05-12 08:55:48 +02:00
Ricardo Wurmus
e610ae78d4
gnu: r-paws-networking: Update to 0.9.0.
...
* gnu/packages/cran.scm (r-paws-networking): Update to 0.9.0.
Change-Id: I364ee0d82cfaf9706d980f6119db00296016328c
2025-05-12 08:55:48 +02:00
Ricardo Wurmus
1cbd59b198
gnu: r-paws-management: Update to 0.9.0.
...
* gnu/packages/cran.scm (r-paws-management): Update to 0.9.0.
Change-Id: Ie87d855a601fc1146c34cebc4ff30cfd68b3f745
2025-05-12 08:55:48 +02:00
Ricardo Wurmus
c70e1a1e54
gnu: r-paws-machine-learning: Update to 0.9.0.
...
* gnu/packages/cran.scm (r-paws-machine-learning): Update to 0.9.0.
Change-Id: I321de81ad18bf8d9919c25c6c97a180816e04d3a
2025-05-12 08:55:48 +02:00
Ricardo Wurmus
73df3b555c
gnu: r-paws-analytics: Update to 0.9.0.
...
* gnu/packages/cran.scm (r-paws-analytics): Update to 0.9.0.
Change-Id: If0e0c6f51ac8d1ea787e14165c4ff513022355ff
2025-05-12 08:55:47 +02:00
Ricardo Wurmus
c4a03a8b93
gnu: r-paws-security-identity: Update to 0.9.0.
...
* gnu/packages/cran.scm (r-paws-security-identity): Update to 0.9.0.
Change-Id: I4ae29cb687826150c9da708e42c357919b1fb659
2025-05-12 08:55:47 +02:00
Ricardo Wurmus
ec40675256
gnu: r-paws-application-integration: Update to 0.9.0.
...
* gnu/packages/cran.scm (r-paws-application-integration): Update to 0.9.0.
Change-Id: Id85247e94a1854019ca57beb584b790f593a0eb1
2025-05-12 08:55:47 +02:00
Ricardo Wurmus
a9cf139610
gnu: r-paws-end-user-computing: Update to 0.9.0.
...
* gnu/packages/cran.scm (r-paws-end-user-computing): Update to 0.9.0.
Change-Id: Id316b69b2e4d8acbe6e6aa8c7dc5d306075d2a0a
2025-05-12 08:55:47 +02:00
Ricardo Wurmus
71fbc534a4
gnu: r-paws-developer-tools: Update to 0.9.0.
...
* gnu/packages/cran.scm (r-paws-developer-tools): Update to 0.9.0.
Change-Id: Ibf2875c0b0d37a6f544019a85be3a8e69f4b7ba2
2025-05-12 08:55:47 +02:00
Ricardo Wurmus
c2f668afbc
gnu: r-paws-cost-management: Update to 0.9.0.
...
* gnu/packages/cran.scm (r-paws-cost-management): Update to 0.9.0.
Change-Id: I4f1930d8b25b6aaa79b79c8f30b5faf85a988c62
2025-05-12 08:55:47 +02:00
Ricardo Wurmus
8c4b1f6aa0
gnu: r-paws-customer-engagement: Update to 0.9.0.
...
* gnu/packages/cran.scm (r-paws-customer-engagement): Update to 0.9.0.
Change-Id: I24d9cf5c0185db68762a896e088732717d7e4e66
2025-05-12 08:55:47 +02:00
Ricardo Wurmus
e437899f84
gnu: r-distributionutils: Update to 0.6-2.
...
* gnu/packages/cran.scm (r-distributionutils): Update to 0.6-2.
[native-inputs]: Remove r-runit.
Change-Id: I4489889d9da20f86b923db6e45207add66423e58
2025-05-12 08:55:47 +02:00
Ricardo Wurmus
4b96c8f745
gnu: r-tzdb: Update to 0.5.0.
...
* gnu/packages/cran.scm (r-tzdb): Update to 0.5.0.
Change-Id: Id6e369f5686195fe612370d8cf6190b25a86a562
2025-05-12 08:55:47 +02:00
Ricardo Wurmus
9753c72ec9
gnu: r-hypergeo: Update to 1.2-14.
...
* gnu/packages/cran.scm (r-hypergeo): Update to 1.2-14.
Change-Id: I045413eec8897dcf901e2a46fdd44472162dec3a
2025-05-12 08:55:46 +02:00
Ricardo Wurmus
4176f0a4b0
gnu: r-rjsonio: Update to 2.0.0.
...
* gnu/packages/cran.scm (r-rjsonio): Update to 2.0.0.
Change-Id: I4016e18784dea414edb579745d6734cd44d3888c
2025-05-12 08:55:46 +02:00
Ricardo Wurmus
482a829f2e
gnu: r-qpdf: Update to 1.3.5.
...
* gnu/packages/cran.scm (r-qpdf): Update to 1.3.5.
Change-Id: I171e4c4402eac438b4301c8107c79b8ed7826e72
2025-05-12 08:55:46 +02:00
Ricardo Wurmus
70a534fb4b
gnu: r-qdapregex: Update to 0.7.10.
...
* gnu/packages/cran.scm (r-qdapregex): Update to 0.7.10.
Change-Id: I7b623c55a197a4b9be48d64e550a84589a785243
2025-05-12 08:55:46 +02:00
Ricardo Wurmus
d4edfb29b3
gnu: r-ragg: Update to 1.4.0.
...
* gnu/packages/cran.scm (r-ragg): Update to 1.4.0.
Change-Id: I911fb0bd40c0b9502a1ea3e711c0d94d95d2e390
2025-05-12 08:55:46 +02:00
Ricardo Wurmus
81bbe65c19
gnu: r-highs: Update to 1.10.0-1.
...
* gnu/packages/cran.scm (r-highs): Update to 1.10.0-1.
[native-inputs]: Add gfortran.
Change-Id: Ic1d25f1a28a54dba056185b3ef157be90669747d
2025-05-12 08:55:46 +02:00
Ricardo Wurmus
f934d204da
gnu: r-mlr3learners: Update to 0.10.0.
...
* gnu/packages/cran.scm (r-mlr3learners): Update to 0.10.0.
Change-Id: I25e309feecc3df43ae29d41eca99ccf71c287cf1
2025-05-12 08:55:46 +02:00
Ricardo Wurmus
4541cbd229
gnu: r-mlr3mbo: Update to 0.2.9.
...
* gnu/packages/cran.scm (r-mlr3mbo): Update to 0.2.9.
Change-Id: Ia70f78edb2d40f6c1bbf5ae538708b37c6cdf22b
2025-05-12 08:55:46 +02:00
Ricardo Wurmus
1a048dbc18
gnu: r-mlr3cluster: Update to 0.1.11.
...
* gnu/packages/cran.scm (r-mlr3cluster): Update to 0.1.11.
[native-inputs]: Add r-apcluster and r-mlbench.
Change-Id: Icc4f077d77bcc1b37c733286aecf168d605317a4
2025-05-12 08:55:45 +02:00
Ricardo Wurmus
ccf7afd987
gnu: r-seuratobject: Update to 5.1.0.
...
* gnu/packages/cran.scm (r-seuratobject): Update to 5.1.0.
Change-Id: Id39fc310c0188be49a2eeb217b5b88c18fb2b399
2025-05-12 08:55:45 +02:00
Ricardo Wurmus
57dd4f14c1
gnu: r-tidymodels: Update to 1.3.0.
...
* gnu/packages/cran.scm (r-tidymodels): Update to 1.3.0.
Change-Id: Ib729be775c6e06f5abb422dfbbe52bc6365a54fe
2025-05-12 08:55:45 +02:00
Ricardo Wurmus
c75a0c6547
gnu: r-infer: Update to 1.0.8.
...
* gnu/packages/cran.scm (r-infer): Update to 1.0.8.
[native-inputs]: Add r-vdiffr.
Change-Id: I7da962216fc54ee1d65c3d08d1a3e64c83238730
2025-05-12 08:55:45 +02:00
Ricardo Wurmus
54576fc00e
gnu: r-dials: Update to 1.4.0.
...
* gnu/packages/cran.scm (r-dials): Update to 1.4.0.
[native-inputs]: Remove r-kernlab.
Change-Id: Icd8797312440346c93b1b394c6ae0a04a696c8bc
2025-05-12 08:55:45 +02:00
Ricardo Wurmus
06d0defd78
gnu: r-rsample: Update to 1.3.0.
...
* gnu/packages/cran.scm (r-rsample): Update to 1.3.0.
[native-inputs]: Add r-broom, r-modeldata, and r-withr.
Change-Id: I4f976e157014bd5f7972a58cef7ba56384407d9f
2025-05-12 08:55:45 +02:00
Ricardo Wurmus
0e0f3e5ab9
gnu: r-gpfit: Update to 1.0-9.
...
* gnu/packages/cran.scm (r-gpfit): Update to 1.0-9.
Change-Id: I0e7501aea9978b91ff930b938ee5c15e0770a172
2025-05-12 08:55:45 +02:00
