* gnu/packages/python-science.scm (snakemake): Swap INPUTS to
PROPAGATED-INPUTS as the package may be included in others.
Change-Id: I034d8b18a6f4d145bf7b08584b73a5abd19f955e
This reverts commit 77254ef42d.
* gnu/packages/astronomy.scm (python-jplephem): Nothing is wrong with
tests, no need to skip any.
Change-Id: I8582068ff857055788295cb3c459f782cb357185
There is a duplicated variable with this name in python-science but
different version, rename the variable in python-xyz to reflect it's
version.
* gnu/packages/python-xyz.scm (snakemake): Rename variable to snakemake-5.
(snakemake-6): Inherit from snakemake-5.
Change-Id: Iabb67d68ea5b896a2524eaf9bf73669068cccaeb
* gnu/packages/python-science.scm (snakemake): New variable.
Change-Id: Id61c7955684f5186b9dc884f0c9de4ec73f766ea
Signed-off-by: Steve George <steve@futurile.net>
* gnu/packages/package-management.scm (python-conda-inject): New variable.
Change-Id: Ic4b91e01b68c62fd91a0f6d77e57c6d32c4b5d03
Signed-off-by: Steve George <steve@futurile.net>
* gnu/packages/python-science.scm
(python-snakemake-interface-storage-plugins): New variable.
Change-Id: Ie74edfdc2535f7f26f0c6210a274dfc351336129
Signed-off-by: Steve George <steve@futurile.net>
* gnu/packages/python-science.scm
(python-snakemake-interface-software-deployment-plugins): New variable.
Change-Id: Ia3f6beed3a3ea02607645ca127be52f328b429bb
Signed-off-by: Steve George <steve@futurile.net>
* gnu/packages/python-science.scm
(python-snakemake-interface-report-plugins): New variable.
Change-Id: I8705ba63df668d46ffda575b18ee97bb65acdc6c
Signed-off-by: Steve George <steve@futurile.net>
* gnu/packages/python-science.scm
(python-snakemake-interface-executor-plugins): New variable.
Change-Id: I6bd9c6aec7293b8412c20dac04f82d867400d71c
Signed-off-by: Steve George <steve@futurile.net>
* gnu/packages/python-science.scm (python-snakemake-interface-common):
New variable.
Change-Id: Iaac3acb7f57c3b6aedda7fe48daccbd952faddd5
Signed-off-by: Steve George <steve@futurile.net>
* gnu/packages/python-xyz.scm (python-argparse-dataclass): New variable.
Change-Id: If669a77f36753b4639136fc612dda42aca1a61f9
Signed-off-by: Steve George <steve@futurile.net>
* gnu/packages/graph.scm (python-louvain)
[build-system]: Switch from python-build-system to
pyproject-build-system.
[native-inputs]: Replace python-setuptools-57 by
python-setuptools. Add python-wheel.
Change-Id: I3c07564dd8fd3f75e33a2cc9737372e28c57f733
Signed-off-by: Steve George <steve@futurile.net>
* gnu/packages/python-xyz.scm (python-importlib-resource)
[native-inputs]: Replace python-setuptools-57 by python-setuptools.
Signed-off-by: Steve George <steve@futurile.net>
* gnu/packages/sphinx.scm (sphinx-5)[arguments]{test-flags}: Ignore
test test_autodoc_default_options (also ignored in sphinx@6).
Change-Id: I0bbb844051b57541b517aba20a6eee0830fb7544
Signed-off-by: Steve George <steve@futurile.net>
* gnu/packages/patchutils.scm (patchwork): Update to 3.2.1.
Change-Id: Ia6f9cd9431e2e49268ad283f98c8fae6fce4aaef
Signed-off-by: Steve George <steve@futurile.net>
* gnu/packages/python-web.scm (python-cfn-lint): Update to 1.28.0.
Change-Id: I1fa1a4836b2e4b1e360eaf08aa8399dda6435c48
Signed-off-by: Steve George <steve@futurile.net>
* gnu/packages/monitoring.scm (graphite-web): Update to 1.1.10-2.49c28e2.
Change-Id: I10355a9b398b42bab04963608ed43d21a7df6fe6
Signed-off-by: Steve George <steve@futurile.net>
* gnu/packages/monitoring.scm (python-rrdtool): New variable.
Change-Id: Ifcfcaf745b88016ee2a4f260f0b9bbb77adcbcca
Signed-off-by: Steve George <steve@futurile.net>
* gnu/packages/monitoring.scm (python-carbon): Update to 1.1.10.
Change-Id: I5a6af8a2ab1f2f8a87883f5be7f74b642ee6669e
Signed-off-by: Steve George <steve@futurile.net>
* gnu/packages/python-web.scm (gunicorn)[arguments]
{phases}: Remove 'check phase and migrate its flags to...
{test-flags}: ...here.
Change-Id: I0635d386d91ef2476dd513787df166f1b181c03c
Signed-off-by: Steve George <steve@futurile.net>
No users in Guix, it was intermediate variable which is no longer required.
* gnu/packages/sphinx.scm (python-sphinx-autodoc-typehints-5): Delete variable.
Change-Id: I0c24541d4615c34559dee1da264042fad6206708
It's a leaf package without users in Guix, failed to build and
archived upstream 4 years ago: "This repository was archived by the
owner on Jan 2, 2021. It is now read-only."
* gnu/packages/python-xyz.scm (python-caniusepython3): Delete variable.
Change-Id: I45ccdfb92dee71d5b7d65e7c7bd0736f305e1d4c
As seen in <https://ci.guix.gnu.org/eval/2052486/log/raw>
* gnu/packages/machine-learning.scm (python-transformers):
[native-inputs]: Remove python-parameterized-next; add
python-parameterized.
Change-Id: I49f3c53737f829a7cdb64fb87d39f0e090802052
Keep urllib3@1.26.17 but under the dedicated variable name making it
less confusing with "-next" suffix which is meant to be higher version
of the current one.
* gnu/packages/python-web.scm (python-urllib3-next): Update to
2.3.0. Inherit from python-urllib3.
[native-inputs]: Add python-hatchling and python-hatch-vcs.
(python-urllib3-1.26): New variable.
(python-elasticsearch) [propagated-inputs]: Remove python-urllib3-next;
add python-urllib3-1.26.
* gnu/packages/android.scm (sdkmanager) [inputs]: Remove
python-urllib3-next; add python-urllib3-1.26.
* gnu/packages/package-management.scm (conan) [propagated-inputs]:
Likewise.
* gnu/packages/video.scm (yt-dlp) [inputs]: Likewise.
Change-Id: I2679dda98180815d4e3580d965b8db9c61e53f4a
* gnu/packages/python-xyz.scm (python-aenum): Update to 3.1.15.
[build-system]: Switch to pyproject.
[arguments] <phases>: Use default 'check; add 'fix-tests.
<test-flags>: Skip 3 failing tests.
[native-inputs]: Add python-pytest, python-setuptools, and python-wheel.
[home-page]: Fix it, Bitbucket's one no longer exists, current one was
taken from <https://pypi.org/project/aenum/>.
Change-Id: I43994aac2ea688a63066ee8c8aa1855c51632ac2
* gnu/packages/maths.scm (glm): Update to 1.0.1. Apply a list style.
[source]: Switch to git-fetch.
[arguments] <phases>: Remove 'set-environment as
<https://github.com/g-truc/glm/pull/1087> is resolved. Use default
'install as <https://github.com/g-truc/glm/pull/968> is resolved.
Add 'post-install.
Change-Id: Ibda3768102ac94f6ef69057bfccd8716f7f91d0e
