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178913 commits

Author SHA1 Message Date
Ricardo Wurmus
3f36265033
gnu: r-renv: Update to 1.1.6.
* gnu/packages/cran.scm (r-renv): Update to 1.1.6.

Change-Id: I7b79aac860e90512ce04e68d4c244ee8948ea1e1
2026-01-23 11:30:40 +01:00
Ricardo Wurmus
e9b055c590
gnu: r-rappdirs: Update to 0.3.4.
* gnu/packages/cran.scm (r-rappdirs): Update to 0.3.4.
[native-inputs]: Add r-withr.

Change-Id: I219262146e710033d820484ff2bc763ac0c76202
2026-01-23 11:30:40 +01:00
Ricardo Wurmus
042399644b
gnu: r-xfun: Update to 0.56.
* gnu/packages/cran.scm (r-xfun): Update to 0.56.

Change-Id: Icc8aca396e06fa7c7d08d935b7459b4de163c816
2026-01-23 11:30:40 +01:00
Ricardo Wurmus
e07debf9e1
gnu: r-fastmatch: Update to 1.1-8.
* gnu/packages/cran.scm (r-fastmatch): Update to 1.1-8.

Change-Id: I3d5956cb57819e41464beb3a140d980aa7e958b4
2026-01-23 11:30:40 +01:00
Ricardo Wurmus
688c8c49c5
gnu: r-ctrdata: Update to 1.26.0.
* gnu/packages/cran.scm (r-ctrdata): Update to 1.26.0.

Change-Id: I1c999473b302ddc3f427aa1391a5dd761ca50707
2026-01-23 11:30:40 +01:00
Ricardo Wurmus
0e1d9905e2
gnu: r-rcppthread: Update to 2.3.0.
* gnu/packages/cran.scm (r-rcppthread): Update to 2.3.0.

Change-Id: I81d36a22d619be0dec52af70c7dd3122671bf74a
2026-01-23 11:30:40 +01:00
Ricardo Wurmus
e07720582e
gnu: r-rcppspdlog: Update to 0.0.26.
* gnu/packages/cran.scm (r-rcppspdlog): Update to 0.0.26.

Change-Id: Ie99e7ed1139f87d0b6e3ed3fbada09833338239b
2026-01-23 11:30:40 +01:00
Ricardo Wurmus
a39feed820
gnu: r-ggtangle: Update to 0.1.1.
* gnu/packages/cran.scm (r-ggtangle): Update to 0.1.1.

Change-Id: I0d0e5a796720c3d90cb5c31be28efe157bae9acc
2026-01-23 11:30:40 +01:00
Ricardo Wurmus
314a88ed73
gnu: r-secretbase: Update to 1.1.1.
* gnu/packages/cran.scm (r-secretbase): Update to 1.1.1.

Change-Id: I1f1d54fbca21f7e7276cfc42e619029b5c50b285
2026-01-23 11:30:40 +01:00
Ricardo Wurmus
80b0ce607f
gnu: r-tglkmeans: Update to 0.5.8.
* gnu/packages/cran.scm (r-tglkmeans): Update to 0.5.8.
[propagated-inputs]: Remove r-dorng.
[native-inputs]: Add r-withr.

Change-Id: Ib1371d359250298bcbbc0fee983fbd59aac1bcc5
2026-01-23 11:30:39 +01:00
Ricardo Wurmus
1e2012490f
gnu: r-grandr: Update to 0.2.7.
* gnu/packages/cran.scm (r-grandr): Update to 0.2.7.

Change-Id: I141309efd1c54fe5bb129fb15483910cd4384b04
2026-01-23 11:30:39 +01:00
Ricardo Wurmus
ffe419c002
gnu: r-polylabelr: Update to 1.0.0.
* gnu/packages/cran.scm (r-polylabelr): Update to 1.0.0.

Change-Id: I25934e0fab6a4cff35434e501fa2f670239594e9
2026-01-23 11:30:39 +01:00
Ricardo Wurmus
5191159455
gnu: r-survival: Update to 3.8-6.
* gnu/packages/cran.scm (r-survival): Update to 3.8-6.

Change-Id: I7387ae6c17a018691241bd87d2a8ceec4039be0e
2026-01-23 11:30:39 +01:00
Ricardo Wurmus
c95cbb403b
gnu: r-snowflakeauth: Update to 0.2.1.
* gnu/packages/cran.scm (r-snowflakeauth): Update to 0.2.1.

Change-Id: If80238894dcd41d3a92fb9175098083b07298bbe
2026-01-23 11:30:39 +01:00
Ricardo Wurmus
44ad6947a6
gnu: r-ggpp: Update to 0.6.0.
* gnu/packages/cran.scm (r-ggpp): Update to 0.6.0.
[propagated-inputs]: Remove r-magrittr.

Change-Id: I2b63310594f4483fa4b65300d6b9c0d43250fc72
2026-01-23 11:30:39 +01:00
Ricardo Wurmus
e8c46523e8
gnu: r-clock: Update to 0.7.4.
* gnu/packages/cran.scm (r-clock): Update to 0.7.4.

Change-Id: I8be3a7dfeb19ea363723f3ffce541e172d1bfaac
2026-01-23 11:30:39 +01:00
Ricardo Wurmus
e3b0d64ea8
gnu: r-benchmarkmedata: Update to 2.0.0.
* gnu/packages/cran.scm (r-benchmarkmedata): Update to 2.0.0.
[propagated-inputs]: Add r-rlang.

Change-Id: Ief524aa780b66fd5468a0c14defb3347fb645e55
2026-01-23 11:30:39 +01:00
Ricardo Wurmus
2acd86b6b5
gnu: r-prabclus: Update to 2.3-5.
* gnu/packages/cran.scm (r-prabclus): Update to 2.3-5.
[native-inputs]: Remove r-spdep.

Change-Id: I740edcdd761d25daa822ace4c3136ed69289d383
2026-01-23 11:30:39 +01:00
Ricardo Wurmus
28d340ced8
gnu: r-fpc: Update to 2.2-14.
* gnu/packages/cran.scm (r-fpc): Update to 2.2-14.

Change-Id: I5e38e38d331a1b9a5d729659a2944f62c93116be
2026-01-23 11:30:39 +01:00
Ricardo Wurmus
7a4421574b
gnu: r-blob: Update to 1.3.0.
* gnu/packages/cran.scm (r-blob): Update to 1.3.0.

Change-Id: I4364109ba8d6e121ee8de8419b99db68d5509e50
2026-01-23 11:30:39 +01:00
Ricardo Wurmus
21834ea62e
gnu: r-netgsa: Update to 4.0.7.
* gnu/packages/bioconductor.scm (r-netgsa): Update to 4.0.7.
[propagated-inputs]: Remove r-org-hs-eg-db.

Change-Id: I3e40676dc5e4fdecf988c003d2dd2f338526e317
2026-01-23 11:30:39 +01:00
Ricardo Wurmus
adee931e79
gnu: r-stringfish: Update to 0.18.0.
* gnu/packages/cran.scm (r-stringfish): Update to 0.18.0.
[properties]: Record updater-ignored-native-inputs.
[inputs]: Remove tbb-2020.
[native-inputs]: Add r-dplyr, r-rlang, and r-stringr.

Change-Id: If64356fc2f989e689fe4d6903b99e1d33ab6aad4
2026-01-23 11:30:38 +01:00
Ricardo Wurmus
0aff377885
gnu: r-extradistr: Update to 1.10.0.2.
* gnu/packages/cran.scm (r-extradistr): Update to 1.10.0.2.
[propagated-inputs]: Add r-rcpparmadillo.

Change-Id: I764745d71a08ba8ad54c47482062f2e7714dcec4
2026-01-23 11:30:38 +01:00
Ricardo Wurmus
6d28170c77
gnu: r-stringdist: Update to 0.9.17.
* gnu/packages/cran.scm (r-stringdist): Update to 0.9.17.

Change-Id: I7c4ffcb53de537833eb00792023b316c5e61aa4d
2026-01-23 11:30:38 +01:00
Ricardo Wurmus
da37f3056d
gnu: r-vctrs: Update to 0.7.0.
* gnu/packages/cran.scm (r-vctrs): Update to 0.7.0.

Change-Id: Icdac7c8c9906a820a62a1cdc4b5bfe6114ba3fc7
2026-01-23 11:30:38 +01:00
Ricardo Wurmus
ef900b0054
gnu: r-manipulatewidget: Update to 0.11.2.
* gnu/packages/cran.scm (r-manipulatewidget): Update to 0.11.2.
[native-inputs]: Add r-leaflet.

Change-Id: I1a342a002ffe825d1327d01a17d2ea53488244e5
2026-01-23 11:30:38 +01:00
Ricardo Wurmus
cf68d3ff53
gnu: r-rcppannoy: Update to 0.0.23.
* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.23.
[native-inputs]: Add r-rcpp and r-tinytest.

Change-Id: I8d5040fab624dca8ca68478a12ef90695b9b8270
2026-01-23 11:30:38 +01:00
Ricardo Wurmus
0cc3eb6cac
gnu: r-rnifti: Update to 1.9.0.
* gnu/packages/cran.scm (r-rnifti): Update to 1.9.0.
[native-inputs]: Add r-testthat.

Change-Id: Idcb511e46f96b32feed2374a867e0f620aee79be
2026-01-23 11:30:38 +01:00
Ricardo Wurmus
7632847c2c
gnu: r-zarrarray: Update to 1.0-2.3cc3e6a.
* gnu/packages/bioinformatics.scm (r-zarrarray): Update to 1.0-2.3cc3e6a.
[properties]: Record updater-extra-native-inputs.
[propagated-inputs]: Remove r-pizzarr; add r-rarr.
[native-inputs]: Add r-testthat.
[arguments]: Disable tests.

Change-Id: Id3a9b564c21ee779e4a46e02cd478d06d9dd5bc9
2026-01-23 11:30:38 +01:00
Ricardo Wurmus
226da2ca10
gnu: r-pizzarr: Update to 0.1.0-2.5f47057.
* gnu/packages/bioinformatics.scm (r-pizzarr): Update to 0.1.0-2.5f47057.

Change-Id: Id5f24214e67dcc00093ceaa1d6f2297b6146aa51
2026-01-23 11:30:38 +01:00
Ricardo Wurmus
78b6d472be
gnu: r-qs: Skip another test.
* gnu/packages/cran.scm (r-qs)[arguments]: Remove qattributes_testing.R.

Change-Id: Ia2b6cb3c9ed959ff3c42c0bd52cae1615d0bd319
2026-01-23 11:30:38 +01:00
Ricardo Wurmus
36d0937fa3
gnu: r-zarrdataframe: Update to 0.0.0-2.84c7db2.
* gnu/packages/bioinformatics.scm (r-zarrdataframe): Update to
0.0.0-2.84c7db2.
[properties]: Record updater-extra-native-inputs.
[propagated-inputs]: Remove r-pizzarr and r-zarrarray; add r-rarr.
[native-inputs]: Add r-testthat.

Change-Id: I65e3f52f85ccd297ddab320b4d951023d226bcdf
2026-01-23 11:30:37 +01:00
Ricardo Wurmus
620d422301
gnu: Add r-rarr.
* gnu/packages/bioconductor.scm (r-rarr): New variable.

Change-Id: Ia302b53f601295663246e66b9587c427a6ffd926
2026-01-23 11:30:37 +01:00
Ricardo Wurmus
4717268f99
gnu: r-signac: Update to 1.16.0-1.f5a8411.
* gnu/packages/bioinformatics.scm (r-signac): Update to 1.16.0-1.f5a8411.
[properties]: Record updater-extra-native-inputs.
[propagated-inputs]: Add r-lifecycle and r-rlang.

Change-Id: Iadf5bb7cb05e691ea601caad91a90ad45dde7726
2026-01-23 11:30:37 +01:00
Ricardo Wurmus
4aedbfc3f7
gnu: r-msnid: Disable one test.
* gnu/packages/bioconductor.scm (r-msnid)[arguments]: Add phase
'disable-bad-tests.

Change-Id: I188a069530c1aa7da663b438a079b736866e8bb5
2026-01-23 11:30:37 +01:00
Ricardo Wurmus
54da52a62c
gnu: r-tximeta: Update to 1.28.1.
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.28.1.

Change-Id: Id10c5bdd793e8efcb051bce989fb06519bf0e739
2026-01-23 11:30:37 +01:00
Ricardo Wurmus
300f9ac160
gnu: r-bayesspace: Update to 1.20.2.
* gnu/packages/bioconductor.scm (r-bayesspace): Update to 1.20.2.

Change-Id: Ibec763f651410d4943e46abb2ea1e97870fa79cb
2026-01-23 11:30:37 +01:00
Ricardo Wurmus
5d00090f05
gnu: r-mscoreutils: Update to 1.22.1.
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.22.1.

Change-Id: I6b53479c8388babf1fe039ce34770e9ef2f7f2db
2026-01-23 11:30:37 +01:00
Ricardo Wurmus
c9f948ce50
gnu: r-sparsearray: Update to 1.10.8.
* gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.10.8.

Change-Id: I4d9b5eba4dbc7efdb779770249fb0a904700fcd2
2026-01-23 11:30:37 +01:00
Ricardo Wurmus
99b2a8c5f9
gnu: r-h5mread: Update to 1.2.1.
* gnu/packages/bioconductor.scm (r-h5mread): Update to 1.2.1.

Change-Id: I5a794952dffa1440516c82daebf5ee2e655fff1d
2026-01-23 11:30:37 +01:00
Ricardo Wurmus
5f01d1c422
gnu: r-s4arrays: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.10.1.

Change-Id: Idd461cf7717c8d5ed2563c4649a0eb29254a1077
2026-01-23 11:30:37 +01:00
Ricardo Wurmus
834075237e
gnu: r-bioccheck: Update to 1.46.3.
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.46.3.

Change-Id: Ib223054930edbf8220b4fbffc0847e712ef14748
2026-01-23 11:30:37 +01:00
Ricardo Wurmus
bd6b3e6df6
gnu: r-ucsc-utils: Update to 1.6.1.
* gnu/packages/bioconductor.scm (r-ucsc-utils): Update to 1.6.1.

Change-Id: Idef0e80e438b58f47b272ecf1c1559070a5b3160
2026-01-23 11:30:37 +01:00
Ricardo Wurmus
8a1fc11cdc
gnu: r-variancepartition: Update to 1.40.1.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.40.1.
[propagated-inputs]: Add r-reformulas.

Change-Id: Id6b3920b2d201249a55ccc7440e63b12039011a8
2026-01-23 11:30:37 +01:00
Ricardo Wurmus
86b2cbaaec
gnu: r-flowworkspace: Update to 4.22.1.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.22.1.

Change-Id: Ie25dc585234ca7f91fcbbc8782663eecd23e7f1a
2026-01-23 11:30:36 +01:00
Ricardo Wurmus
faf7c1019c
gnu: r-ggcyto: Update to 1.38.1.
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.38.1.

Change-Id: Idb7f65900f13935b1e2195ab75107a24b38794c4
2026-01-23 11:30:36 +01:00
Ricardo Wurmus
2b7cfa4c22
gnu: r-flowcore: Update to 2.22.1.
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.22.1.

Change-Id: I39861ca4db2858cdf872124935860436eebb4d0c
2026-01-23 11:30:36 +01:00
Ricardo Wurmus
09a13d7978
gnu: r-wppi: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-wppi): Update to 1.18.0.

Change-Id: I2cca7f805fd74973fdc2046ccaa151be8732248d
2026-01-23 11:30:36 +01:00
Ricardo Wurmus
33617f7077
gnu: r-yapsa: Update to 1.36.1.
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.36.1.

Change-Id: Ie96ba3c80116ca6174cc3b3265b220229b3c804d
2026-01-23 11:30:36 +01:00
Ricardo Wurmus
151565ad4f
gnu: r-clusterprofiler: Update to 4.18.4.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.18.4.

Change-Id: I9672e94f8ff1d0c91a5464c9c69910983756d53e
2026-01-23 11:30:36 +01:00