Ricardo Wurmus
3348fc50c6
gnu: r-graph: Update to 1.88.1.
...
* gnu/packages/bioconductor.scm (r-graph): Update to 1.88.1.
Change-Id: Ib9c224219e1cdfc88317dbd1ed603fbd5cf27737
2026-01-23 08:24:22 +01:00
Ricardo Wurmus
fb089aee88
gnu: r-zellkonverter: Update to 1.20.1.
...
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.20.1.
Change-Id: I770fb48f3b4f86a41a47e71987b67c86f97bd8bc
2026-01-23 08:24:22 +01:00
Ricardo Wurmus
c9febfc213
gnu: r-tximport: Update to 1.38.2.
...
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.38.2.
Change-Id: I2fbda6da6a535d56ea69f6e7a2937e5a3f838e62
2026-01-23 08:24:22 +01:00
Ricardo Wurmus
b0b687e470
gnu: r-systempiper: Update to 2.16.3.
...
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.16.3.
Change-Id: I7e8a52ebeb28d45b7ee2d4e85d1381f4a56cd916
2026-01-23 08:24:22 +01:00
Ricardo Wurmus
c766f0ee5c
gnu: r-spectra: Update to 1.20.1.
...
* gnu/packages/bioconductor.scm (r-spectra): Update to 1.20.1.
Change-Id: I69f3974af0074b0237d2d02f7bb9096399ed5a3d
2026-01-23 08:24:22 +01:00
Ricardo Wurmus
102dd8309d
gnu: r-transcriptr: Update to 1.38.3.
...
* gnu/packages/bioconductor.scm (r-transcriptr): Update to 1.38.3.
[propagated-inputs]: Remove r-e1071.
Change-Id: Ib4543931338d8faa6e93c181287f8aa3f2af6fdf
2026-01-23 08:24:21 +01:00
Ricardo Wurmus
6c132cb281
gnu: r-tcgautils: Update to 1.30.2.
...
* gnu/packages/bioconductor.scm (r-tcgautils): Update to 1.30.2.
Change-Id: Iaa3ec26078a51c715e417e01395feb11281fa0fc
2026-01-23 08:24:21 +01:00
Ricardo Wurmus
11dd0a43c4
gnu: r-sesame: Update to 1.28.1.
...
* gnu/packages/bioconductor.scm (r-sesame): Update to 1.28.1.
Change-Id: I310b74b4403a66d797aad658706ebd0a508226b7
2026-01-23 08:24:21 +01:00
Ricardo Wurmus
f9ff28a17c
gnu: r-rtracklayer: Update to 1.70.1.
...
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.70.1.
Change-Id: I3de097129c278a8667323f23f001a0788dac8fec
2026-01-23 08:24:21 +01:00
Ricardo Wurmus
c2ca4d6372
gnu: r-rhdf5: Update to 2.54.1.
...
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.54.1.
Change-Id: I923a8119848614871fab5eef520a9e87ac71fd1a
2026-01-23 08:24:21 +01:00
Ricardo Wurmus
8e775d3596
gnu: r-rcy3: Update to 2.30.1.
...
* gnu/packages/bioconductor.scm (r-rcy3): Update to 2.30.1.
Change-Id: I805ed3b33d5a51b02a8a8d2a376e23fdab8e53ad
2026-01-23 08:24:21 +01:00
Ricardo Wurmus
69e3ec110d
gnu: r-gsva: Update to 2.4.4.
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* gnu/packages/bioconductor.scm (r-gsva): Update to 2.4.4.
[propagated-inputs]: Remove r-delayedmatrixstats; add r-memuse.
Change-Id: Ibcef712b3af99d367a84a45461e041b3a3ba4980
2026-01-23 08:24:21 +01:00
Ricardo Wurmus
966f492dc3
gnu: r-genomicranges: Update to 1.62.1.
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* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.62.1.
Change-Id: I63bc5e3e2d55227f6988f76c9ca2684eb501a703
2026-01-23 08:24:21 +01:00
Ricardo Wurmus
8ebe787fca
gnu: r-genomeinfodb: Update to 1.46.2.
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* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.46.2.
Change-Id: I68b54eec8c36cd149133f9c7827a6d544180529c
2026-01-23 08:24:21 +01:00
Ricardo Wurmus
cdd4fb38eb
gnu: r-enhancedvolcano: Update to 1.28.2.
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* gnu/packages/bioconductor.scm (r-enhancedvolcano): Update to 1.28.2.
[propagated-inputs]: Add r-scales.
Change-Id: I5b32e6f2dfb78380dd053bc8fbae763c9a467133
2026-01-23 08:24:20 +01:00
Ricardo Wurmus
096d008e64
gnu: r-edger: Update to 4.8.2.
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* gnu/packages/bioconductor.scm (r-edger): Update to 4.8.2.
Change-Id: Ie8020f24945f4f601d8ea054d9136eebffc1f0d1
2026-01-23 08:24:20 +01:00
Ricardo Wurmus
b1a0082163
gnu: r-immapex: Update to 1.4.3.
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* gnu/packages/bioconductor.scm (r-immapex): Update to 1.4.3.
Change-Id: Ic2bb78f46701bd20818d0f85908a9f2dce9f80c1
2026-01-23 08:24:20 +01:00
Ricardo Wurmus
1b932e0fef
gnu: r-escape: Update to 2.6.2.
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* gnu/packages/bioconductor.scm (r-escape): Update to 2.6.2.
Change-Id: I27bb75063ae4a294bced8a65c5e2b0cd2d959d30
2026-01-23 08:24:20 +01:00
Ricardo Wurmus
af81f48f03
gnu: r-atena: Update to 1.16.1.
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* gnu/packages/bioconductor.scm (r-atena): Update to 1.16.1.
Change-Id: I2ec9271dc5b01af0cf24a319082beb933d978882
2026-01-23 08:24:20 +01:00
Ricardo Wurmus
c600406c22
gnu: r-anvil: Update to 1.22.3.
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* gnu/packages/bioconductor.scm (r-anvil): Update to 1.22.3.
Change-Id: I53bcec395deb1cceb34646558c5a76b94140497e
2026-01-23 08:24:20 +01:00
Ricardo Wurmus
c37ecc97d1
gnu: r-systempiperdata: Update to 2.14.2.
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* gnu/packages/bioconductor.scm (r-systempiperdata): Update to 2.14.2.
Change-Id: I204b83fdb779970833e35698ab00b5cf3097ac98
2026-01-23 08:24:20 +01:00
Ricardo Wurmus
56e858b083
gnu: r-reactome-db: Update to 1.95.0.
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* gnu/packages/bioconductor.scm (r-reactome-db): Update to 1.95.0.
Change-Id: Ie3095869415bf010a3071b0d4339d5f66c65c898
2026-01-23 08:24:20 +01:00
Ricardo Wurmus
ceda48808e
gnu: r-txdbmaker: Update to 1.6.2.
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* gnu/packages/bioconductor.scm (r-txdbmaker): Update to 1.6.2.
[properties]: Record one more package in updater-extra-native-inputs.
Change-Id: Ie25a9043e7b02ee75e619140fbf3289185209b99
2026-01-23 08:24:20 +01:00
Ricardo Wurmus
a5ed485bc5
gnu: r-screpertoire: Update to 2.6.2.
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* gnu/packages/bioconductor.scm (r-screpertoire): Update to 2.6.2.
[arguments]: Disable more tests.
Change-Id: I0818c1220c08f7a9309f7106e1661ff6ea8a058b
2026-01-23 08:24:19 +01:00
Ricardo Wurmus
7e68d9b6d4
gnu: Add r-tidydr.
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* gnu/packages/cran.scm (r-tidydr): New variable.
Change-Id: I6f1df1135799abdb88c1a9fd517ee4bda70b80ff
2026-01-23 08:24:19 +01:00
Ricardo Wurmus
450a7d254c
gnu: r-tidyr: Update to 1.3.2.
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* gnu/packages/statistics.scm (r-tidyr): Update to 1.3.2.
[native-inputs]: Add r-data-table.
Change-Id: I336a5d28a25f7332484ab100dc0d584c82246760
2026-01-23 08:24:19 +01:00
Ricardo Wurmus
c2fab2df5d
gnu: r-rcpparmadillo: Update to 15.2.3-1.
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* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 15.2.3-1.
Change-Id: I6ae07a5da82f7d54f94f9eb6a3a1af32b0f2cd85
2026-01-23 08:24:19 +01:00
Ricardo Wurmus
0cf810fd57
gnu: r-tibble: Update to 3.3.1.
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* gnu/packages/statistics.scm (r-tibble): Update to 3.3.1.
Change-Id: I2e21659aa9a735db33f9dd4e95b3d57034f3f3de
2026-01-23 08:24:19 +01:00
Ricardo Wurmus
b8d38a188a
gnu: r-rlang: Update to 1.1.7.
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* gnu/packages/statistics.scm (r-rlang): Update to 1.1.7.
Change-Id: I294e0bf7716a98d985dc3638b43bbbe5c571de28
2026-01-23 08:24:19 +01:00
Ricardo Wurmus
13743fc808
gnu: r-tesseract: Update to 5.2.4.
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* gnu/packages/cran.scm (r-tesseract): Update to 5.2.4.
Change-Id: I4efddb10ea2da028f07120bbd910d50a1fbe166b
2026-01-23 08:24:19 +01:00
Ricardo Wurmus
a31e44bfac
gnu: r-vgam: Update to 1.1-14.
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* gnu/packages/cran.scm (r-vgam): Update to 1.1-14.
Change-Id: I88acba25a1ddaf11df3683898f2eeb065cf034f2
2026-01-23 08:24:19 +01:00
Ricardo Wurmus
7efabe7e2d
gnu: r-delaporte: Update to 8.4.3.
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* gnu/packages/cran.scm (r-delaporte): Update to 8.4.3.
Change-Id: I3599fa6ba58c4f53b4e703c4f29eb5bcdc254fde
2026-01-23 08:24:19 +01:00
Ricardo Wurmus
c7c82ff7f7
gnu: r-stars: Update to 0.7-0.
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* gnu/packages/cran.scm (r-stars): Update to 0.7-0.
Change-Id: I5d93bba6b7cc827f404e3b158cb3893bfca73ad2
2026-01-23 08:24:18 +01:00
Ricardo Wurmus
4266f4def5
gnu: r-highlight: Update to 0.5.2.
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* gnu/packages/cran.scm (r-highlight): Update to 0.5.2.
Change-Id: Ie80492b9656e59e1f90b0263ba5f691430a6290f
2026-01-23 08:24:18 +01:00
Ricardo Wurmus
2d69fd2108
gnu: r-mlr3tuning: Update to 1.5.1.
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* gnu/packages/cran.scm (r-mlr3tuning): Update to 1.5.1.
Change-Id: Id5a3cd491ee555aabe503e91c3132f4aa9ca111f
2026-01-23 08:24:18 +01:00
Ricardo Wurmus
4bc78bac4e
gnu: r-mlr3learners: Update to 0.14.0.
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* gnu/packages/cran.scm (r-mlr3learners): Update to 0.14.0.
Change-Id: I091cbc18f2e6dc992051c6e9c3e1abeeefd524e8
2026-01-23 08:24:18 +01:00
Ricardo Wurmus
01900de500
gnu: r-mlr3: Update to 1.3.0.
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* gnu/packages/cran.scm (r-mlr3): Update to 1.3.0.
[native-inputs]: Remove r-callr; add r-future-callr.
Change-Id: I95c3b1e6fad8e9349a957104c705837ba6dbf146
2026-01-23 08:24:18 +01:00
Ricardo Wurmus
ddd08ceb02
gnu: r-seurat: Update to 5.4.0.
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* gnu/packages/cran.scm (r-seurat): Update to 5.4.0.
[propagated-inputs]: Remove r-leidenbase.
Change-Id: Id47e87104046e60ffafcb7dd2bfb123b4b3b2fc2
2026-01-23 08:24:18 +01:00
Ricardo Wurmus
5336f1a2e1
gnu: r-seuratobject: Update to 5.3.0.
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* gnu/packages/cran.scm (r-seuratobject): Update to 5.3.0.
Change-Id: Id948b1f2dc7946c68feb962f4ad666276675b90c
2026-01-23 08:24:18 +01:00
Ricardo Wurmus
bc2de388dd
gnu: r-qtl: Update to 1.74.
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* gnu/packages/cran.scm (r-qtl): Update to 1.74.
Change-Id: I85d588ae6a5a0225f311e759de1bbdfbbdff705b
2026-01-23 08:24:18 +01:00
Ricardo Wurmus
e5615fb5b8
gnu: r-lsa: Update to 0.73.4.
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* gnu/packages/cran.scm (r-lsa): Update to 0.73.4.
Change-Id: Ia185a6241791f922a7f0415ae372f9e1daadee15
2026-01-23 08:24:18 +01:00
Ricardo Wurmus
dec4e78824
gnu: r-infer: Update to 1.1.0.
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* gnu/packages/cran.scm (r-infer): Update to 1.1.0.
[propagated-inputs]: Add r-withr.
Change-Id: I3fcec413969c22a20f081f9f713edf512fd17070
2026-01-23 08:24:17 +01:00
Ricardo Wurmus
3f41774b22
gnu: r-parsnip: Update to 1.4.1.
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* gnu/packages/cran.scm (r-parsnip): Update to 1.4.1.
Change-Id: I3cd9d5d00e54603a0be1a3831ae5098b947a39e9
2026-01-23 08:24:17 +01:00
Ricardo Wurmus
e26d8e051a
gnu: r-tidypredict: Update to 1.0.1.
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* gnu/packages/cran.scm (r-tidypredict): Update to 1.0.1.
[propagated-inputs]: Add r-jsonlite.
Change-Id: Ia456329dba312110511e6d6a7d65e25b5ded220c
2026-01-23 08:24:17 +01:00
Ricardo Wurmus
ee343b6e32
gnu: r-nanoarrow: Update to 0.7.0-2.
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* gnu/packages/cran.scm (r-nanoarrow): Update to 0.7.0-2.
Change-Id: Id91a8b49f2e076eb1caea3bdefdba2fd01d39a23
2026-01-23 08:24:17 +01:00
Ricardo Wurmus
58e763c42b
gnu: r-clusterr: Update to 1.3.6.
...
* gnu/packages/cran.scm (r-clusterr): Update to 1.3.6.
Change-Id: Ia13d0a6425bd52fea7856b5d91445f2d72e7132d
2026-01-23 08:24:17 +01:00
Ricardo Wurmus
2680fb6436
gnu: r-spatstat-utils: Update to 3.2-1.
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* gnu/packages/cran.scm (r-spatstat-utils): Update to 3.2-1.
Change-Id: I069338d3125cec5f416afaae3343e0969077a3c3
2026-01-23 08:24:17 +01:00
Ricardo Wurmus
ea9be6aaa2
gnu: r-shapforxgboost: Update to 0.2.0.
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* gnu/packages/cran.scm (r-shapforxgboost): Update to 0.2.0.
Change-Id: I1dc22b7165fd1348e5d3a7e7614662b751c798ec
2026-01-23 08:24:17 +01:00
Ricardo Wurmus
8ac7090d3e
gnu: r-projpred: Update to 2.10.0.
...
* gnu/packages/cran.scm (r-projpred): Update to 2.10.0.
[propagated-inputs]: Add r-reformulas.
[native-inputs]: Remove r-callr; add r-future-callr.
Change-Id: I523f743f8a27fcfcf2b5f459a9cb652228d4ad89
2026-01-23 08:24:17 +01:00
Ricardo Wurmus
6ac5eff82c
gnu: r-kendall: Update to 2.2.2.
...
* gnu/packages/cran.scm (r-kendall): Update to 2.2.2.
Change-Id: I6294706a1c3e97f8d20783fb68caf84b49ec479a
2026-01-23 08:24:17 +01:00
