Commit graph

178733 commits

Author SHA1 Message Date
Ricardo Wurmus
2fdd557fd3
gnu: r-selectr: Update to 0.5-1.
* gnu/packages/cran.scm (r-selectr): Update to 0.5-1.

Change-Id: I1cf80ebfe79bf39b6ab18cdb8bf0e973b0171269
2026-01-23 11:30:26 +01:00
Ricardo Wurmus
f4cb5832a7
gnu: r-secretbase: Update to 1.1.0.
* gnu/packages/cran.scm (r-secretbase): Update to 1.1.0.

Change-Id: Icb84ccc77be54880c4764be7f6d1727512a88f26
2026-01-23 11:30:26 +01:00
Ricardo Wurmus
74ef3e4c2c
gnu: r-astsa: Update to 2.4.
* gnu/packages/cran.scm (r-astsa): Update to 2.4.

Change-Id: I1ffcbcc797e5ed5350d1e825f78715bffb0749ff
2026-01-23 11:30:26 +01:00
Ricardo Wurmus
41efbfeda6
gnu: r-mclogit: Update to 0.9.15.
* gnu/packages/cran.scm (r-mclogit): Update to 0.9.15.
[propagated-inputs]: Add r-mass and r-nlme.

Change-Id: I1e0a964abb3974fa2d902f77ec608d02ddda438b
2026-01-23 11:30:26 +01:00
Ricardo Wurmus
00f9cddc6a
gnu: r-ga: Update to 3.2.5.
* gnu/packages/cran.scm (r-ga): Update to 3.2.5.

Change-Id: I817586330bd9ca99866f1acf8e2ea5ff4ae0b8b8
2026-01-23 11:30:25 +01:00
Ricardo Wurmus
f0948bf836
gnu: r-plumber: Update to 1.3.2.
* gnu/packages/cran.scm (r-plumber): Update to 1.3.2.
[native-inputs]: Remove r-covr and r-mockery; add r-withr.

Change-Id: Ia87ac935feb1aec918f8fcc6ca4fe142b44206ca
2026-01-23 11:30:25 +01:00
Ricardo Wurmus
0b6cfe1760
gnu: r-plotmo: Update to 3.7.0.
* gnu/packages/cran.scm (r-plotmo): Update to 3.7.0.

Change-Id: I6d9d0f0f8cdef8c7c6bd4b57061bba3076ea9470
2026-01-23 11:30:25 +01:00
Ricardo Wurmus
19f30114ef
gnu: r-plotfunctions: Update to 1.5.
* gnu/packages/cran.scm (r-plotfunctions): Update to 1.5.

Change-Id: I861e7b989af43c8146bb5813bf2361b5a70bdf19
2026-01-23 11:30:25 +01:00
Ricardo Wurmus
7265477e1a
gnu: r-oompabase: Update to 3.2.11.
* gnu/packages/cran.scm (r-oompabase): Update to 3.2.11.

Change-Id: I51fff0a4ce06dde2ea9da939dd87c483a41341cf
2026-01-23 11:30:25 +01:00
Ricardo Wurmus
d74d29594b
gnu: r-ggvenndiagram: Update to 1.5.7.
* gnu/packages/cran.scm (r-ggvenndiagram): Update to 1.5.7.

Change-Id: If055a4782890e5ab78fa07239878fa681d853789
2026-01-23 11:30:25 +01:00
Ricardo Wurmus
1b566d6a32
gnu: r-zoo: Update to 1.8-15.
* gnu/packages/cran.scm (r-zoo): Update to 1.8-15.

Change-Id: I28f003ade67ece8fc3073e5e85297d350e576ce4
2026-01-23 11:30:25 +01:00
Ricardo Wurmus
695ae6ec48
gnu: r-climatol: Update to 4.4-0.
* gnu/packages/cran.scm (r-climatol): Update to 4.4-0.

Change-Id: I60905ae124016914058a80fc19ab260980226cdf
2026-01-23 11:30:25 +01:00
Ricardo Wurmus
a710c0391b
gnu: r-climaemet: Update to 1.5.0.
* gnu/packages/cran.scm (r-climaemet): Update to 1.5.0.

Change-Id: I1d00ebd3c9bbfa0fbe67839d52ecfe8c793548bf
2026-01-23 11:30:25 +01:00
Ricardo Wurmus
76fdf06c4d
gnu: r-robslopes: Update to 1.1.4.
* gnu/packages/cran.scm (r-robslopes): Update to 1.1.4.

Change-Id: I23f0aba6b3c26a2fba15a529be42e4a7ff45ab03
2026-01-23 11:30:25 +01:00
Ricardo Wurmus
f94f0f9edc
gnu: r-ggstatsplot: Update to 0.13.4.
* gnu/packages/cran.scm (r-ggstatsplot): Update to 0.13.4.

Change-Id: I14ee5adc6ff9bf4b4de15d3ba8b36c8e74a25df4
2026-01-23 11:30:25 +01:00
Ricardo Wurmus
70efdc1f8a
gnu: r-ggstats: Update to 0.12.0.
* gnu/packages/cran.scm (r-ggstats): Update to 0.12.0.
[native-inputs]: Remove r-vdiffr.

Change-Id: I3ac1c29f71031da0ba3f72af636eb232ac00d46d
2026-01-23 11:30:25 +01:00
Ricardo Wurmus
627c4582ad
gnu: r-ggfittext: Update to 0.10.3.
* gnu/packages/cran.scm (r-ggfittext): Update to 0.10.3.
[native-inputs]: Add r-spelling.

Change-Id: I5b7a79695e8edb692aa667eff9fb8ae1a5d856bd
2026-01-23 11:30:24 +01:00
Ricardo Wurmus
6737480dfc
gnu: r-earth: Update to 5.3.5.
* gnu/packages/cran.scm (r-earth): Update to 5.3.5.

Change-Id: Iad667e1c71dcec160cc22419b808273df028329f
2026-01-23 11:30:24 +01:00
Ricardo Wurmus
d1049ab66a
gnu: r-data-table: Update to 1.18.0.
* gnu/packages/cran.scm (r-data-table): Update to 1.18.0.

Change-Id: I8b78db4fc5aefc1df40ab762d73416ff2d98124a
2026-01-23 11:30:24 +01:00
Ricardo Wurmus
88522017eb
gnu: r-collapse: Update to 2.1.6.
* gnu/packages/cran.scm (r-collapse): Update to 2.1.6.

Change-Id: Ia81cc276420bfcb60182c0404f44861b4452ff8e
2026-01-23 11:30:24 +01:00
Ricardo Wurmus
798abfcc28
gnu: r-cardx: Update to 0.3.1.
* gnu/packages/cran.scm (r-cardx): Update to 0.3.1.

Change-Id: I16b8eec05f29c378d84955815583e25983a338d3
2026-01-23 11:30:24 +01:00
Ricardo Wurmus
aef879af48
gnu: r-abn: Update to 3.1.13.
* gnu/packages/bioconductor.scm (r-abn): Update to 3.1.13.

Change-Id: I8d47ad284fadc9eab77bfa4d2d4a3b6933fadd32
2026-01-23 11:30:24 +01:00
Ricardo Wurmus
a54351b9be
gnu: r-metap: Update to 1.13.
* gnu/packages/bioconductor.scm (r-metap): Update to 1.13.

Change-Id: I081bc90a14d6c29793745010d810fefb2efe92a7
2026-01-23 11:30:24 +01:00
Ricardo Wurmus
602cbc2939
gnu: r-mutoss: Update to 0.1-14.
* gnu/packages/bioconductor.scm (r-mutoss): Update to 0.1-14.

Change-Id: I9abef0d88d82035fe70a0c5e7b33f2d0f8cff136
2026-01-23 11:30:24 +01:00
Ricardo Wurmus
1be75412e8
gnu: r-valr: Update to 0.9.1.
* gnu/packages/bioconductor.scm (r-valr): Update to 0.9.1.
[propagated-inputs]: Remove r-rcpp; add r-cpp11.
[native-inputs]: Remove r-vdiffr.

Change-Id: Ibf47ba48bcde2165cc86e152509aea8909f570fa
2026-01-23 11:30:24 +01:00
Ricardo Wurmus
0bf9680093
gnu: r-cpp11bigwig: Update to 0.1.3.
* gnu/packages/bioconductor.scm (r-cpp11bigwig): Update to 0.1.3.

Change-Id: I5ffedb3da41c26c484f68a39aadb03ccf73f5b9b
2026-01-23 11:30:24 +01:00
Ricardo Wurmus
f5934f83d9
gnu: r-bh: Update to 1.90.0-1.
* gnu/packages/cran.scm (r-bh): Update to 1.90.0-1.

Change-Id: I24dfa7a2344574e4d49765bbd53e20f2f5b38ac5
2026-01-23 11:30:24 +01:00
Ricardo Wurmus
125a6bff67
gnu: r-testthat: Update to 3.3.2.
* gnu/packages/statistics.scm (r-testthat): Update to 3.3.2.

Change-Id: I843c4f04c7a745912b94fac0eab08249d535e3d6
2026-01-23 11:30:24 +01:00
Ricardo Wurmus
f5d5053df7
gnu: r-duckdb: Update to 1.4.3.
* gnu/packages/duckdb.scm (r-duckdb): Update to 1.4.3.

Change-Id: Ib4cdff90acd61b0158891e3b488a62207bea3f1e
2026-01-23 11:30:23 +01:00
Ricardo Wurmus
8adc00030d
gnu: r-shinystan: Update to 2.7.0.
* gnu/packages/cran.scm (r-shinystan): Update to 2.7.0.
[properties]: Record updater-ignored-native-inputs.
[native-inputs]: Add r-cmdstanr and r-knitr.

Change-Id: I687b029aefdeac504aba772f87790c6bb63182ea
2026-01-23 11:30:23 +01:00
Ricardo Wurmus
a52bd3dc52
gnu: r-rmapshaper: Add update note.
* gnu/packages/cran.scm (r-rmapshaper): Add comment.

Change-Id: I0764333b5c3b0a4f373e2fdcf923d87c661d66bf
2026-01-23 11:30:23 +01:00
Ricardo Wurmus
104823a8c3
gnu: r-glmmtmb: Disable one test.
* gnu/packages/cran.scm (r-glmmtmb)[arguments]: Add phase 'disable-bad-tests.

Change-Id: I67b09c9063c9a80b20839115048497226e5c4da6
2026-01-23 11:30:23 +01:00
Ricardo Wurmus
355d0f087c
gnu: r-vcr: Update to 2.1.0.
* gnu/packages/cran.scm (r-vcr): Update to 2.1.0.
[properties]: Record updater-extra-native-inputs.

Change-Id: I58434aceb6b1a61bd910075c3c8cac46d2fcaffa
2026-01-23 11:30:23 +01:00
Ricardo Wurmus
e35746fcad
gnu: r-maxlik: Update to 1.5-2.2.
* gnu/packages/cran.scm (r-maxlik): Update to 1.5-2.2.
[properties]: Record updater-extra-native-inputs.
[native-inputs]: Add r-tinytest.

Change-Id: I616e9660de100a4892e4b617bbeb982b5ecf91d4
2026-01-23 11:30:23 +01:00
Ricardo Wurmus
530227b170
gnu: r-microbiomestat: Update to 1.3.
* gnu/packages/bioconductor.scm (r-microbiomestat): Update to 1.3.
[properties]: Record updater-extra-inputs and updater-extra-native-inputs.
[inputs]: Add nlopt.
[native-inputs]: Add pkg-config.
[propagated-inputs]: Add r-bbmisc, r-dplyr, r-foreach, r-lhs, r-mlr, r-mlrmbo,
r-paramhelpers, r-rcpp, r-rcpparmadillo, and r-smoof.

Change-Id: Ia326065121daeacb364ab07e82d4435f228f01f7
2026-01-23 11:30:23 +01:00
Ricardo Wurmus
58057f5b12
gnu: r-paletteer: Update to 1.7.0.
* gnu/packages/cran.scm (r-paletteer): Update to 1.7.0.
[properties]: Record updater-extra-native-inputs.
[propagated-inputs]: Add r-cli.
[native-inputs]: Add r-ggplot2, r-scico, and r-vdiffr.

Change-Id: I205c37c270e980e625524af30b783047aa24572d
2026-01-23 11:30:23 +01:00
Ricardo Wurmus
db67882075
gnu: r-futile-logger: Update to 1.4.9.
* gnu/packages/cran.scm (r-futile-logger): Update to 1.4.9.
[arguments]: Remove.
[native-inputs]: Remove r-testthat; add r-jsonlite and r-testit.

Change-Id: Ia70f807a9b9cedc5c6aa9fae94357785c685c4e1
2026-01-23 11:30:23 +01:00
Ricardo Wurmus
ac20251f5b
gnu: r-yulab-utils: Update to 0.2.3.
* gnu/packages/cran.scm (r-yulab-utils): Update to 0.2.3.
[native-inputs]: Add r-testthat.

Change-Id: I15115ce4cc0a6bef8e684bff4ac7c116fc33f055
2026-01-23 11:30:23 +01:00
Ricardo Wurmus
3f1edf7b2e
gnu: r-aster: Update to 1.3-7.
* gnu/packages/cran.scm (r-aster): Update to 1.3-7.
[properties]: Record updater-extra-native-inputs.

Change-Id: I8a6efce45d3f4ab065a17bdc8c19fbbe82554158
2026-01-23 11:30:23 +01:00
Ricardo Wurmus
197ecf5974
gnu: r-yaml: Update to 2.3.12.
* gnu/packages/cran.scm (r-yaml): Update to 2.3.12.
[properties]: Record updater-ignored-native-inputs; remove
updater-extra-native-inputs.
[native-inputs]: Remove r-runit.
[arguments]: Disable tests.

Change-Id: Ic32cd7734ef4628e7b795ed24ed6f06ce6b9cd91
2026-01-23 11:30:23 +01:00
Ricardo Wurmus
64d282906e
gnu: r-wk: Update to 0.9.5.
* gnu/packages/cran.scm (r-wk): Update to 0.9.5.
[properties]: Remove updater-extra-native-inputs; record
updater-ignored-native-inputs.
[native-inputs]: Add r-png and r-readr.

Change-Id: Ia9ecbd044cb23e1ab2a53bc08a6246c326808647
2026-01-23 11:30:22 +01:00
Ricardo Wurmus
1eca31fa73
gnu: r-later: Update to 1.4.5.
* gnu/packages/cran.scm (r-later): Update to 1.4.5.
[properties]: Update updater-ignored-native-inputs list.

Change-Id: Ie44814bd63f8aee2a6557e18272128ee94b4bab8
2026-01-23 11:30:22 +01:00
Ricardo Wurmus
8be940d8ee
gnu: r-redland: Update to 1.0.17-19.
* gnu/packages/cran.scm (r-redland): Update to 1.0.17-19.

Change-Id: Id0db793ffce22f3306c802ddfeb631c932ec1233
2026-01-23 11:30:22 +01:00
Ricardo Wurmus
61276fbd96
gnu: r-loo: Update to 2.9.0.
* gnu/packages/cran.scm (r-loo): Update to 2.9.0.
[native-inputs]: Add r-mcmcpack and r-mvtnorm.
[properties]: Record updater-ignored-native-inputs.

Change-Id: I5a4a465f1cec7b6516de60c2f7990e5389a1fe43
2026-01-23 11:30:22 +01:00
Ricardo Wurmus
5a829a2d28
gnu: r-litedown: Update to 0.9.
* gnu/packages/cran.scm (r-litedown): Update to 0.9.
[properties]: Record updater-extra-native-inputs.

Change-Id: I6514899e700d6f673bc2e2e6669ea14279c20054
2026-01-23 11:30:22 +01:00
Ricardo Wurmus
5f8b46cca5
gnu: r-ctrdata: Update to 1.25.1.
* gnu/packages/cran.scm (r-ctrdata): Update to 1.25.1.
[source]: Update snippet to delete additional minified JavaScript file.
[arguments]: Update 'process-javascript phase to process jstree source file.
[propagated-inputs]: Remove r-xml2.
[native-inputs]: Remove r-r-rsp; add jstree sources.

Change-Id: I4abb6493aa7767a4ca72f43d42e0584b40fa2d6c
2026-01-23 11:30:22 +01:00
Ricardo Wurmus
95016077ff
gnu: r-rcpp: Update to 1.1.1.
* gnu/packages/cran.scm (r-rcpp): Update to 1.1.1.
[arguments]: Skip building vignettes.

Change-Id: I3252bdc60ae257ac7c24d803f4080e4c9ae08b1c
2026-01-23 11:30:22 +01:00
Ricardo Wurmus
366298a3ad
gnu: r-feather: Update to 0.4.0.
* gnu/packages/cran.scm (r-feather): Update to 0.4.0.
[propagated-inputs]: Add r-arrow; remove r-rcpp; move r-tibble and r-hms from
here...
[native-inputs]: ...to here.

Change-Id: I2e52257d6af75eebdddc9a785498aed11be3479a
2026-01-23 11:30:22 +01:00
Ricardo Wurmus
2674fa1be8
gnu: r-geos: Update to 0.2.5.
* gnu/packages/cran.scm (r-geos): Update to 0.2.5.
[properties]: Record updater-ignored-native-inputs.
[native-inputs]: Add r-terra.

Change-Id: I7702d35a26413792ce4d9104900384286a49c141
2026-01-23 11:30:22 +01:00
Ricardo Wurmus
e397d80636
gnu: r-htmltools: Update to 0.5.9.
* gnu/packages/cran.scm (r-htmltools): Update to 0.5.9.
[properties]: Record updater-ignored-native-inputs.
[arguments]: Remove.
[native-inputs]: Remove r-markdown; add r-withr.

Change-Id: I04c2a78dc7d4987eeef17c7cc21353624a4ad3ff
2026-01-23 11:30:22 +01:00