Ricardo Wurmus
4aedbfc3f7
gnu: r-msnid: Disable one test.
...
* gnu/packages/bioconductor.scm (r-msnid)[arguments]: Add phase
'disable-bad-tests.
Change-Id: I188a069530c1aa7da663b438a079b736866e8bb5
2026-01-23 11:30:37 +01:00
Ricardo Wurmus
54da52a62c
gnu: r-tximeta: Update to 1.28.1.
...
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.28.1.
Change-Id: Id10c5bdd793e8efcb051bce989fb06519bf0e739
2026-01-23 11:30:37 +01:00
Ricardo Wurmus
300f9ac160
gnu: r-bayesspace: Update to 1.20.2.
...
* gnu/packages/bioconductor.scm (r-bayesspace): Update to 1.20.2.
Change-Id: Ibec763f651410d4943e46abb2ea1e97870fa79cb
2026-01-23 11:30:37 +01:00
Ricardo Wurmus
5d00090f05
gnu: r-mscoreutils: Update to 1.22.1.
...
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.22.1.
Change-Id: I6b53479c8388babf1fe039ce34770e9ef2f7f2db
2026-01-23 11:30:37 +01:00
Ricardo Wurmus
c9f948ce50
gnu: r-sparsearray: Update to 1.10.8.
...
* gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.10.8.
Change-Id: I4d9b5eba4dbc7efdb779770249fb0a904700fcd2
2026-01-23 11:30:37 +01:00
Ricardo Wurmus
99b2a8c5f9
gnu: r-h5mread: Update to 1.2.1.
...
* gnu/packages/bioconductor.scm (r-h5mread): Update to 1.2.1.
Change-Id: I5a794952dffa1440516c82daebf5ee2e655fff1d
2026-01-23 11:30:37 +01:00
Ricardo Wurmus
5f01d1c422
gnu: r-s4arrays: Update to 1.10.1.
...
* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.10.1.
Change-Id: Idd461cf7717c8d5ed2563c4649a0eb29254a1077
2026-01-23 11:30:37 +01:00
Ricardo Wurmus
834075237e
gnu: r-bioccheck: Update to 1.46.3.
...
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.46.3.
Change-Id: Ib223054930edbf8220b4fbffc0847e712ef14748
2026-01-23 11:30:37 +01:00
Ricardo Wurmus
bd6b3e6df6
gnu: r-ucsc-utils: Update to 1.6.1.
...
* gnu/packages/bioconductor.scm (r-ucsc-utils): Update to 1.6.1.
Change-Id: Idef0e80e438b58f47b272ecf1c1559070a5b3160
2026-01-23 11:30:37 +01:00
Ricardo Wurmus
8a1fc11cdc
gnu: r-variancepartition: Update to 1.40.1.
...
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.40.1.
[propagated-inputs]: Add r-reformulas.
Change-Id: Id6b3920b2d201249a55ccc7440e63b12039011a8
2026-01-23 11:30:37 +01:00
Ricardo Wurmus
86b2cbaaec
gnu: r-flowworkspace: Update to 4.22.1.
...
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.22.1.
Change-Id: Ie25dc585234ca7f91fcbbc8782663eecd23e7f1a
2026-01-23 11:30:36 +01:00
Ricardo Wurmus
faf7c1019c
gnu: r-ggcyto: Update to 1.38.1.
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* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.38.1.
Change-Id: Idb7f65900f13935b1e2195ab75107a24b38794c4
2026-01-23 11:30:36 +01:00
Ricardo Wurmus
2b7cfa4c22
gnu: r-flowcore: Update to 2.22.1.
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* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.22.1.
Change-Id: I39861ca4db2858cdf872124935860436eebb4d0c
2026-01-23 11:30:36 +01:00
Ricardo Wurmus
09a13d7978
gnu: r-wppi: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-wppi): Update to 1.18.0.
Change-Id: I2cca7f805fd74973fdc2046ccaa151be8732248d
2026-01-23 11:30:36 +01:00
Ricardo Wurmus
33617f7077
gnu: r-yapsa: Update to 1.36.1.
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* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.36.1.
Change-Id: Ie96ba3c80116ca6174cc3b3265b220229b3c804d
2026-01-23 11:30:36 +01:00
Ricardo Wurmus
151565ad4f
gnu: r-clusterprofiler: Update to 4.18.4.
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* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.18.4.
Change-Id: I9672e94f8ff1d0c91a5464c9c69910983756d53e
2026-01-23 11:30:36 +01:00
Ricardo Wurmus
63d4849290
gnu: r-enrichplot: Update to 1.30.4.
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* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.30.4.
[propagated-inputs]: Remove r-magrittr; add r-tidydr.
Change-Id: I87d3866091c21706dbeb2f0e5f3cbeee0169bbab
2026-01-23 11:30:36 +01:00
Ricardo Wurmus
4c336c1f64
gnu: r-fgsea: Update to 1.36.2.
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* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.36.2.
Change-Id: If6e95a2a2d86a21533059b2e8d393ea99b0cd94a
2026-01-23 11:30:36 +01:00
Ricardo Wurmus
2536e5fc3e
gnu: r-ggtree: Update to 4.0.4.
...
* gnu/packages/bioconductor.scm (r-ggtree): Update to 4.0.4.
Change-Id: I30dd4c7202921e2985cdba14203af81a0999eb79
2026-01-23 11:30:36 +01:00
Ricardo Wurmus
b718d73c68
gnu: r-graph: Update to 1.88.1.
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* gnu/packages/bioconductor.scm (r-graph): Update to 1.88.1.
Change-Id: Ib9c224219e1cdfc88317dbd1ed603fbd5cf27737
2026-01-23 11:30:36 +01:00
Ricardo Wurmus
ec6eacbaff
gnu: r-zellkonverter: Update to 1.20.1.
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* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.20.1.
Change-Id: I770fb48f3b4f86a41a47e71987b67c86f97bd8bc
2026-01-23 11:30:36 +01:00
Ricardo Wurmus
5763557995
gnu: r-tximport: Update to 1.38.2.
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* gnu/packages/bioconductor.scm (r-tximport): Update to 1.38.2.
Change-Id: I2fbda6da6a535d56ea69f6e7a2937e5a3f838e62
2026-01-23 11:30:36 +01:00
Ricardo Wurmus
849d9c683e
gnu: r-systempiper: Update to 2.16.3.
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* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.16.3.
Change-Id: I7e8a52ebeb28d45b7ee2d4e85d1381f4a56cd916
2026-01-23 11:30:36 +01:00
Ricardo Wurmus
70482b6826
gnu: r-spectra: Update to 1.20.1.
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* gnu/packages/bioconductor.scm (r-spectra): Update to 1.20.1.
Change-Id: I69f3974af0074b0237d2d02f7bb9096399ed5a3d
2026-01-23 11:30:35 +01:00
Ricardo Wurmus
3de9a5ca19
gnu: r-transcriptr: Update to 1.38.3.
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* gnu/packages/bioconductor.scm (r-transcriptr): Update to 1.38.3.
[propagated-inputs]: Remove r-e1071.
Change-Id: Ib4543931338d8faa6e93c181287f8aa3f2af6fdf
2026-01-23 11:30:35 +01:00
Ricardo Wurmus
26046db011
gnu: r-tcgautils: Update to 1.30.2.
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* gnu/packages/bioconductor.scm (r-tcgautils): Update to 1.30.2.
Change-Id: Iaa3ec26078a51c715e417e01395feb11281fa0fc
2026-01-23 11:30:35 +01:00
Ricardo Wurmus
967fa3bebd
gnu: r-sesame: Update to 1.28.1.
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* gnu/packages/bioconductor.scm (r-sesame): Update to 1.28.1.
Change-Id: I310b74b4403a66d797aad658706ebd0a508226b7
2026-01-23 11:30:35 +01:00
Ricardo Wurmus
3183caa48a
gnu: r-rtracklayer: Update to 1.70.1.
...
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.70.1.
Change-Id: I3de097129c278a8667323f23f001a0788dac8fec
2026-01-23 11:30:35 +01:00
Ricardo Wurmus
c5fb1699ae
gnu: r-rhdf5: Update to 2.54.1.
...
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.54.1.
Change-Id: I923a8119848614871fab5eef520a9e87ac71fd1a
2026-01-23 11:30:35 +01:00
Ricardo Wurmus
419fa16cb1
gnu: r-rcy3: Update to 2.30.1.
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* gnu/packages/bioconductor.scm (r-rcy3): Update to 2.30.1.
Change-Id: I805ed3b33d5a51b02a8a8d2a376e23fdab8e53ad
2026-01-23 11:30:35 +01:00
Ricardo Wurmus
51366470dd
gnu: r-gsva: Update to 2.4.4.
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* gnu/packages/bioconductor.scm (r-gsva): Update to 2.4.4.
[propagated-inputs]: Remove r-delayedmatrixstats; add r-memuse.
Change-Id: Ibcef712b3af99d367a84a45461e041b3a3ba4980
2026-01-23 11:30:35 +01:00
Ricardo Wurmus
1983d614d8
gnu: r-genomicranges: Update to 1.62.1.
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* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.62.1.
Change-Id: I63bc5e3e2d55227f6988f76c9ca2684eb501a703
2026-01-23 11:30:35 +01:00
Ricardo Wurmus
aa70aec7ba
gnu: r-genomeinfodb: Update to 1.46.2.
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* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.46.2.
Change-Id: I68b54eec8c36cd149133f9c7827a6d544180529c
2026-01-23 11:30:35 +01:00
Ricardo Wurmus
de55053147
gnu: r-enhancedvolcano: Update to 1.28.2.
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* gnu/packages/bioconductor.scm (r-enhancedvolcano): Update to 1.28.2.
[propagated-inputs]: Add r-scales.
Change-Id: I5b32e6f2dfb78380dd053bc8fbae763c9a467133
2026-01-23 11:30:35 +01:00
Ricardo Wurmus
6187a4b15c
gnu: r-edger: Update to 4.8.2.
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* gnu/packages/bioconductor.scm (r-edger): Update to 4.8.2.
Change-Id: Ie8020f24945f4f601d8ea054d9136eebffc1f0d1
2026-01-23 11:30:35 +01:00
Ricardo Wurmus
f51536ec8a
gnu: r-immapex: Update to 1.4.3.
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* gnu/packages/bioconductor.scm (r-immapex): Update to 1.4.3.
Change-Id: Ic2bb78f46701bd20818d0f85908a9f2dce9f80c1
2026-01-23 11:30:35 +01:00
Ricardo Wurmus
e91c2436bb
gnu: r-escape: Update to 2.6.2.
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* gnu/packages/bioconductor.scm (r-escape): Update to 2.6.2.
Change-Id: I27bb75063ae4a294bced8a65c5e2b0cd2d959d30
2026-01-23 11:30:35 +01:00
Ricardo Wurmus
0dedefe6a5
gnu: r-atena: Update to 1.16.1.
...
* gnu/packages/bioconductor.scm (r-atena): Update to 1.16.1.
Change-Id: I2ec9271dc5b01af0cf24a319082beb933d978882
2026-01-23 11:30:34 +01:00
Ricardo Wurmus
62cf89ebb1
gnu: r-anvil: Update to 1.22.3.
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* gnu/packages/bioconductor.scm (r-anvil): Update to 1.22.3.
Change-Id: I53bcec395deb1cceb34646558c5a76b94140497e
2026-01-23 11:30:34 +01:00
Ricardo Wurmus
5b63b6ceb6
gnu: r-systempiperdata: Update to 2.14.2.
...
* gnu/packages/bioconductor.scm (r-systempiperdata): Update to 2.14.2.
Change-Id: I204b83fdb779970833e35698ab00b5cf3097ac98
2026-01-23 11:30:34 +01:00
Ricardo Wurmus
dfdefad022
gnu: r-reactome-db: Update to 1.95.0.
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* gnu/packages/bioconductor.scm (r-reactome-db): Update to 1.95.0.
Change-Id: Ie3095869415bf010a3071b0d4339d5f66c65c898
2026-01-23 11:30:34 +01:00
Ricardo Wurmus
c4f407005a
gnu: r-txdbmaker: Update to 1.6.2.
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* gnu/packages/bioconductor.scm (r-txdbmaker): Update to 1.6.2.
[properties]: Record one more package in updater-extra-native-inputs.
Change-Id: Ie25a9043e7b02ee75e619140fbf3289185209b99
2026-01-23 11:30:34 +01:00
Ricardo Wurmus
8530c0098b
gnu: r-screpertoire: Update to 2.6.2.
...
* gnu/packages/bioconductor.scm (r-screpertoire): Update to 2.6.2.
[arguments]: Disable more tests.
Change-Id: I0818c1220c08f7a9309f7106e1661ff6ea8a058b
2026-01-23 11:30:34 +01:00
Ricardo Wurmus
e51bce74c8
gnu: Add r-tidydr.
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* gnu/packages/cran.scm (r-tidydr): New variable.
Change-Id: I6f1df1135799abdb88c1a9fd517ee4bda70b80ff
2026-01-23 11:30:34 +01:00
Ricardo Wurmus
764aeda400
gnu: r-tidyr: Update to 1.3.2.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 1.3.2.
[native-inputs]: Add r-data-table.
Change-Id: I336a5d28a25f7332484ab100dc0d584c82246760
2026-01-23 11:30:34 +01:00
Ricardo Wurmus
ec9e0e163f
gnu: r-rcpparmadillo: Update to 15.2.3-1.
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* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 15.2.3-1.
Change-Id: I6ae07a5da82f7d54f94f9eb6a3a1af32b0f2cd85
2026-01-23 11:30:34 +01:00
Ricardo Wurmus
bc57331318
gnu: r-tibble: Update to 3.3.1.
...
* gnu/packages/statistics.scm (r-tibble): Update to 3.3.1.
Change-Id: I2e21659aa9a735db33f9dd4e95b3d57034f3f3de
2026-01-23 11:30:34 +01:00
Ricardo Wurmus
e146dffe2f
gnu: r-rlang: Update to 1.1.7.
...
* gnu/packages/statistics.scm (r-rlang): Update to 1.1.7.
Change-Id: I294e0bf7716a98d985dc3638b43bbbe5c571de28
2026-01-23 11:30:34 +01:00
Ricardo Wurmus
d8de8c03a4
gnu: r-tesseract: Update to 5.2.4.
...
* gnu/packages/cran.scm (r-tesseract): Update to 5.2.4.
Change-Id: I4efddb10ea2da028f07120bbd910d50a1fbe166b
2026-01-23 11:30:33 +01:00
Ricardo Wurmus
6a936ef741
gnu: r-vgam: Update to 1.1-14.
...
* gnu/packages/cran.scm (r-vgam): Update to 1.1-14.
Change-Id: I88acba25a1ddaf11df3683898f2eeb065cf034f2
2026-01-23 11:30:33 +01:00
