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gnu: r-screpertoire: Update to 2.6.2.

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* gnu/packages/bioconductor.scm (r-screpertoire): Update to 2.6.2.
[arguments]: Disable more tests.

Change-Id: I0818c1220c08f7a9309f7106e1661ff6ea8a058b
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Ricardo Wurmus 2026-01-15 10:31:46 +01:00 • committed by Andreas Enge
parent e51bce74c8
commit 8530c0098b
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1 changed files with 5 additions and 5 deletions
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gnu/packages/bioconductor.scm
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@ -13563,13 +13563,13 @@ different experiment.")
(define-public r-screpertoire
(package
(name "r-screpertoire")
(version "2.5.8")
(version "2.6.2")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "scRepertoire" version))
(sha256
(base32 "0ijycpmaivcqqmdc90h5jx8rcwg9112pl2mdpms1hgvww70x3s6w"))))
(base32 "1n8vdia8bsxikl3vfsnafz1i04qn4kqcrchjrbkzrskbl28mkzq5"))))
(properties
'((upstream-name . "scRepertoire")))
(build-system r-build-system)
@ -13585,14 +13585,14 @@ different experiment.")
(string-append m "skip('guix')\n"))
((".*getContigDoublets works for inputs with doublets.*" m)
(string-append m "skip('guix')\n")))
(substitute* "tests/testthat/test-combineContigs.R"
((".*combineBCR works.*" m)
(string-append m "skip('guix')\n")))
(substitute* "tests/testthat/test-loadContigs.R"
((".*loadContigs correctly auto-detects and processes various formats.*" m)
(string-append m "skip('guix')\n"))
((".*loadContigs correctly processes various formats from URL.*" m)
(string-append m "skip('guix')\n")))
;; There is code running outside of testthat that tries to
;; download files off the Internet.
(delete-file "tests/testthat/test-combineContigs.R")
;; These fail with: Unknown property set: 'kideraFactors'.
(substitute* "tests/testthat/test-positionalProperty.R"
((".*positionalProperty: Output structure is correct.*" m)