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161287 commits

Author SHA1 Message Date
Vagrant Cascadian
02abb70078
gnu: linux-libre-arm64-mnt-reform: Update kernel configuration.
Fixes: https://codeberg.org/guix/guix/issues/101

* gnu/packages/linux.scm (linux-libre-arm64-mnt-reform): Add
CONFIG_KEY_DH_OPERATIONS, CONFIG_CRYPTO_USER_API_HASH,
CONFIG_CRYPTO_USER_API_SKCIPHER, CONFIG_CRYPTO_USER_API_RNG, and
CONFIG_CRYPTO_USER_API_AEAD to kernel configuration.

Change-Id: I7ded159a727d092526a573140591741c2a0804b6
2025-05-31 20:05:49 -04:00
Leo Famulari
c55d2c0cd2
gnu: linux-libre 6.12: Update to 6.12.31.
* gnu/packages/linux.scm (linux-libre-6.12-version): Update to 6.12.31.
(linux-libre-6.12-pristine-source, deblob-scripts-6.12): Update hashes.

Change-Id: Id3572cb22d021c5b65a15fa7aefc1a797c853089
2025-05-31 20:05:49 -04:00
Leo Famulari
dfa10bfcd2
gnu: linux-libre: Update to 6.14.9.
* gnu/packages/linux.scm (linux-libre-6.14-version): Update to 6.14.9.
(linux-libre-6.14-pristine-source, deblob-scripts-6.14): Update hashes.

Change-Id: I80b4c00caf04c6417c131d67a5d7881933b60087
2025-05-31 20:05:45 -04:00
Danny Milosavljevic
fd1d786e45
gnu: Add emacs-org-node@3.4.1.
* gnu/packages/emacs-xyz.scm (emacs-org-node-3): New variable.

Change-Id: I8f1a031cd23304ff9a9eb69eb8878b20fd08d946
2025-06-01 00:06:19 +02:00
Danny Milosavljevic
ddc10a65fe
gnu: Add emacs-org-mem@0.14.1.
* gnu/packages/emacs-xyz.scm (emacs-org-mem-0.14): New variable.

Change-Id: Iab5bec26bca8849263cf7af262b0657dc616c54f
2025-06-01 00:06:12 +02:00
Ricardo Wurmus
5fa168af7d
gnu: r-h5mread: Update to 1.0.1.
* gnu/packages/bioconductor.scm (r-h5mread): Update to 1.0.1.

Change-Id: I311083e4c7fefe82fee93bf7305feeb922e434f5
2025-05-31 23:46:23 +02:00
Ricardo Wurmus
a4150a1749
gnu: r-bioccheck: Update to 1.44.2.
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.44.2.

Change-Id: Iafd29878627a4f41a1458c8417de0035bf380c5a
2025-05-31 23:46:23 +02:00
Ricardo Wurmus
2ba59b2b6e
gnu: r-systempiper: Update to 2.14.1.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.14.1.

Change-Id: I91c9f49510b44f708f722e51d914031e9057db5a
2025-05-31 23:46:22 +02:00
Ricardo Wurmus
e6be0c57b7
gnu: r-spectra: Update to 1.18.2.
* gnu/packages/bioconductor.scm (r-spectra): Update to 1.18.2.

Change-Id: Ia7a793a867bfe8abdddec33c8c880d8829070ea7
2025-05-31 23:46:22 +02:00
Ricardo Wurmus
525224c2b9
gnu: r-limma: Update to 3.64.1.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.64.1.

Change-Id: I0b3fc6f0c5ca32465e5a7eabcf90aaed60c94189
2025-05-31 23:46:22 +02:00
Ricardo Wurmus
6a9b7e26f5
gnu: r-genomicdatacommons: Update to 1.32.1.
* gnu/packages/bioconductor.scm (r-genomicdatacommons): Update to 1.32.1.

Change-Id: I4bc55fa75825426ecb884109cf29791fd2747aac
2025-05-31 23:46:22 +02:00
Ricardo Wurmus
63dd62715d
gnu: r-anvil: Update to 1.20.1.
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.20.1.

Change-Id: Ica835b921d4e4e157914516acce88b356a211cf4
2025-05-31 23:46:22 +02:00
Ricardo Wurmus
11c7ff6172
gnu: r-ancombc: Update to 2.10.1.
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.10.1.

Change-Id: Ie15e53edc7ef4595d0230bee6db9ea097c0cf637
2025-05-31 23:46:22 +02:00
Ricardo Wurmus
6f62d7d5bc
gnu: r-systempiperdata: Update to 2.12.2.
* gnu/packages/bioconductor.scm (r-systempiperdata): Update to 2.12.2.

Change-Id: Iad841ef06fa935c9050c2610e2820f6ac70c87ac
2025-05-31 23:46:22 +02:00
Ricardo Wurmus
3d7dfff1f9
gnu: r-ggh4x: Update to 0.3.1.
* gnu/packages/cran.scm (r-ggh4x): Update to 0.3.1.
[propagated-inputs]: Add r-s7.

Change-Id: I8957f6b85404f92251e392a76fc63e66dca2a10b
2025-05-31 23:46:22 +02:00
Ricardo Wurmus
dbc150a8ca
gnu: r-paws-common: Update to 0.8.4.
* gnu/packages/cran.scm (r-paws-common): Update to 0.8.4.

Change-Id: Ie3df6080a4f807ae16561bdc2c4813e6660cc274
2025-05-31 23:46:22 +02:00
Ricardo Wurmus
c1c237868b
gnu: r-mlr3learners: Update to 0.12.0.
* gnu/packages/cran.scm (r-mlr3learners): Update to 0.12.0.

Change-Id: I656eb21bb9940cb8ce8d76009755112ccbc8ba43
2025-05-31 23:46:21 +02:00
Ricardo Wurmus
b0545ed2f0
gnu: r-mlr3misc: Update to 0.18.0.
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.18.0.
[native-inputs]: Add r-mirai.

Change-Id: I41687ca18abaa117f671aaff5e9965bb6b96e990
2025-05-31 23:46:21 +02:00
Ricardo Wurmus
cd31054c45
gnu: r-parsnip: Update to 1.3.2.
* gnu/packages/cran.scm (r-parsnip): Update to 1.3.2.

Change-Id: Idcb3f0fd63cac4236d7b1a2bb9be71732880bbdc
2025-05-31 23:46:21 +02:00
Ricardo Wurmus
e3162e1d5c
gnu: r-workflowsets: Update to 1.1.1.
* gnu/packages/cran.scm (r-workflowsets): Update to 1.1.1.
[propagated-inputs]: Remove r-glue.
[native-inputs]: Add r-dials, r-recipes, r-spelling, r-tidyclust, and r-yardstick.

Change-Id: I3ba532ae8d8f88cb7f2d5db8f14abe102108ece7
2025-05-31 23:46:21 +02:00
Ricardo Wurmus
84f0fbdce0
gnu: r-spatstat: Update to 3.3-3.
* gnu/packages/cran.scm (r-spatstat): Update to 3.3-3.

Change-Id: I123c382f18f2989ea78066224ec611e283fda78d
2025-05-31 23:46:21 +02:00
Ricardo Wurmus
e301388af8
gnu: r-spatstat-linnet: Update to 3.2-6.
* gnu/packages/cran.scm (r-spatstat-linnet): Update to 3.2-6.

Change-Id: Id9cd15740e4e203ed85a3f66856c498034703f95
2025-05-31 23:46:21 +02:00
Ricardo Wurmus
ea9fadfed7
gnu: r-spatstat-model: Update to 3.3-6.
* gnu/packages/cran.scm (r-spatstat-model): Update to 3.3-6.

Change-Id: I8fb655d7cb2e1920f58e73d2df25a7078707be9a
2025-05-31 23:46:21 +02:00
Ricardo Wurmus
bc39c708d8
gnu: r-keyring: Update to 1.4.0.
* gnu/packages/cran.scm (r-keyring): Update to 1.4.0.
[propagated-inputs]: Remove r-assertthat, r-openssl, r-rappdirs, and r-sodium.
[native-inputs]: Add r-callr, r-openssl, and r-withr.

Change-Id: I5b8e3604dea869cc0b21dc171f6c4048ee1cd7f6
2025-05-31 23:46:21 +02:00
Ricardo Wurmus
e2be385bce
gnu: r-erm: Update to 1.0-10.
* gnu/packages/cran.scm (r-erm): Update to 1.0-10.

Change-Id: I0342edf85e3caf9d012a47a1fa71890ad5dd1010
2025-05-31 23:46:20 +02:00
Ricardo Wurmus
c643784d9e
gnu: r-anndata: Update to 0.8.0.
* gnu/packages/cran.scm (r-anndata): Update to 0.8.0.
[propagated-inputs]: Add r-cli and r-lifecycle.

Change-Id: I2612dafade345410a20d1ecfc954ddc1fbbcce73
2025-05-31 23:46:20 +02:00
Ricardo Wurmus
9450074b57
gnu: r-fda: Update to 6.3.0.
* gnu/packages/cran.scm (r-fda): Update to 6.3.0.

Change-Id: Ieb54600a9e8b95a83c617b03683c5a069e70c710
2025-05-31 23:46:20 +02:00
Ricardo Wurmus
3d828e97b6
gnu: r-smpracticals: Update to 1.4-3.2.
* gnu/packages/cran.scm (r-smpracticals): Update to 1.4-3.2.

Change-Id: Id65ad704391845f6f9a8904224a42937643ad2c2
2025-05-31 23:46:20 +02:00
Ricardo Wurmus
554f578b5e
gnu: r-parameters: Update to 0.26.0.
* gnu/packages/cran.scm (r-parameters): Update to 0.26.0.

Change-Id: I610fa173e1d82dba86c42a1ae1d048586df18e24
2025-05-31 23:46:20 +02:00
Ricardo Wurmus
96ab8d1326
gnu: r-arrow: Update to 20.0.0.2.
* gnu/packages/cran.scm (r-arrow): Update to 20.0.0.2.

Change-Id: I75fcdda39b1ae2f4bee90b4bb075db07042ceb2d
2025-05-31 23:46:20 +02:00
Ricardo Wurmus
8e8cff21c9
gnu: r-s2: Update to 1.1.9.
* gnu/packages/cran.scm (r-s2): Update to 1.1.9.

Change-Id: I68fb10af3dcd23a710c77818173100e55e899fdd
2025-05-31 23:46:20 +02:00
Ricardo Wurmus
00e739aa16
gnu: r-sparsevctrs: Update to 0.3.4.
* gnu/packages/cran.scm (r-sparsevctrs): Update to 0.3.4.

Change-Id: Id79df4a2e93479c4875680439efe3b4d1f579321
2025-05-31 23:46:20 +02:00
Ricardo Wurmus
adbbe779d3
gnu: r-performance: Update to 0.14.0.
* gnu/packages/cran.scm (r-performance): Update to 0.14.0.

Change-Id: I0a39cfd00ef616638d9547192a49d6b86779808b
2025-05-31 23:46:20 +02:00
Ricardo Wurmus
8b660649a8
gnu: r-dofuture: Update to 1.1.0.
* gnu/packages/cran.scm (r-dofuture): Update to 1.1.0.

Change-Id: Ia27ae5e8a0c5f1ba39635a0688fc9fe07c525e25
2025-05-31 23:46:19 +02:00
Ricardo Wurmus
e5e7293556
gnu: r-wrs2: Update to 1.1-7.
* gnu/packages/cran.scm (r-wrs2): Update to 1.1-7.
[native-inputs]: Add r-colorspace, r-ggally, r-ggplot2, and r-mediation.

Change-Id: I1efb0070d39ce79a480ec2440d50b401bb7d7aba
2025-05-31 23:46:19 +02:00
Ricardo Wurmus
4bea83c7b9
gnu: r-writexls: Update to 6.8.0.
* gnu/packages/cran.scm (r-writexls): Update to 6.8.0.

Change-Id: I8c3d585a9dbad6a0de20d52ca26eabc9fee060fd
2025-05-31 23:46:19 +02:00
Ricardo Wurmus
6faff9545d
gnu: r-officer: Update to 0.6.10.
* gnu/packages/cran.scm (r-officer): Update to 0.6.10.
[arguments]: Add phase 'set-HOME.

Change-Id: I4f4c613b0cfc5aaa0d0d1dac12cfb5fccdc6b4b1
2025-05-31 23:46:19 +02:00
Ricardo Wurmus
3ea5e9aa19
gnu: r-promises: Update to 1.3.3.
* gnu/packages/cran.scm (r-promises): Update to 1.3.3.

Change-Id: Ia6c867600af7d68b51d869c1927e5cf06c0fe887
2025-05-31 23:46:19 +02:00
Ricardo Wurmus
804bfcfd44
gnu: r-adbcdrivermanager: Update to 0.18.0.
* gnu/packages/cran.scm (r-adbcdrivermanager): Update to 0.18.0.

Change-Id: Iaed29f26d0c602a29ca4b7b584c738f0ebb826de
2025-05-31 23:46:19 +02:00
Ricardo Wurmus
3b9c7ea5ab
gnu: r-arules: Update to 1.7-11.
* gnu/packages/cran.scm (r-arules): Update to 1.7-11.

Change-Id: If4800bea7c46eed3e63e728b48d13913a1d2ae9d
2025-05-31 23:46:19 +02:00
Ricardo Wurmus
90e2dd287e
gnu: r-statnet-common: Update to 4.12.0.
* gnu/packages/cran.scm (r-statnet-common): Update to 4.12.0.

Change-Id: I20853b1130320b53a2af04843d14f9097957ba2b
2025-05-31 23:46:19 +02:00
Ricardo Wurmus
3c7fb8c1b9
gnu: r-rle: Update to 0.10.0.
* gnu/packages/cran.scm (r-rle): Update to 0.10.0.

Change-Id: Iad4ee0bf268055b2ed40ec39656808ad616907d0
2025-05-31 23:46:19 +02:00
Ricardo Wurmus
a2e64bd6c6
gnu: r-ncdfcf: Update to 0.6.0.
* gnu/packages/cran.scm (r-ncdfcf): Update to 0.6.0.

Change-Id: Ic8703875245bd07919d212850a956b3d2163f628
2025-05-31 23:46:18 +02:00
Ricardo Wurmus
99a99e6e2f
gnu: r-zeallot: Update to 0.2.0.
* gnu/packages/cran.scm (r-zeallot): Update to 0.2.0.
[native-inputs]: Add r-codetools.

Change-Id: I45801c2b3eb5bd135744cea67ac5c8f13e51d273
2025-05-31 23:46:18 +02:00
Ricardo Wurmus
d8498b88b7
gnu: r-tsp: Update to 1.2-5.
* gnu/packages/cran.scm (r-tsp): Update to 1.2-5.

Change-Id: I894b04624a1257cf999c728f33e9d24f8121faf2
2025-05-31 23:46:18 +02:00
Ricardo Wurmus
df0b68e70e
gnu: r-mice: Update to 3.18.0.
* gnu/packages/cran.scm (r-mice): Update to 3.18.0.

Change-Id: If257e098860fe86272f17fc9ab7b104493340543
2025-05-31 23:46:18 +02:00
Ricardo Wurmus
304d4e2bae
gnu: r-rcppdate: Update to 0.0.6.
* gnu/packages/cran.scm (r-rcppdate): Update to 0.0.6.

Change-Id: Iba53073ef48f40fbaba6a79fb38c056ce16c11e5
2025-05-31 23:46:18 +02:00
Ricardo Wurmus
5d34d2f045
gnu: r-haven: Update to 2.5.5.
* gnu/packages/cran.scm (r-haven): Update to 2.5.5.

Change-Id: I7c29728a51fa2d3d74cc4c0b524532b2089b194e
2025-05-31 23:46:18 +02:00
Ricardo Wurmus
ff901d43c8
gnu: r-maps: Update to 3.4.3.
* gnu/packages/cran.scm (r-maps): Update to 3.4.3.

Change-Id: I94ffb14a207c5c68fce05b58d670a350b7627b66
2025-05-31 23:46:18 +02:00
Ricardo Wurmus
2377b85460
gnu: r-curl: Update to 6.2.3.
* gnu/packages/cran.scm (r-curl): Update to 6.2.3.

Change-Id: Ia86d15c31b1d436972f822593b37586b53ddd2f2
2025-05-31 23:46:18 +02:00