mirror of
https://codeberg.org/guix/guix.git
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1aebfc74f1
* gnu/packages/boost.scm (boost-for-source-highlight): Rename this ... (boost-1.83): ... to this. (boost-numpy): Inherit from boost-1.83. * gnu/packages/pretty-print.scm (source-highlight): Update accordingly. * gnu/packages/boost.scm (boost): Update to 1.89.0. [source]: Remove patches. * gnu/packages/boost.scm (mdds) [propagated-inputs]: Replace boost with boost-1.83. * gnu/packages/astronomy.scm (aoflagger), * gnu/packages/embedded.scm (cc-tool), * gnu/packages/games.scm (0ad, vcmi), * gnu/packages/image.scm (gpick), * gnu/packages/maths.scm (highfive), * gnu/packages/plotutils.scm (asymptote) [native-inputs]: Replace boost with boost-1.83. * gnu/packages/audio.scm (guitarix, supercollider), * gnu/packages/bioconductor.scm (r-mzr), * gnu/packages/bioinformatics.scm (ataqv, bless, express, isolator, metabat, r-velocytom, rsem, sailfish, salmon), * gnu/packages/bittorrent.scm (libtorrent-rasterbar), * gnu/packages/code.scm (sourcetrail), * gnu/packages/compression.scm (innoextract), * gnu/packages/cpp.scm (lager), * gnu/packages/crypto.scm (cryfs), * gnu/packages/electronics.scm (nextpnr, prjpeppercorn, prjtrellis, pulseview), * gnu/packages/emulators.scm (mupen64plus-video-glide64mk2), * gnu/packages/engineering.scm (cadabra2, freecad, libigl, openscad, prusa-slicer), * gnu/packages/file-systems.scm (snapper), * gnu/packages/finance.scm (ledger), * gnu/packages/game-development.scm (dds), * gnu/packages/games.scm (colobot, fifengine, knightsgame, leela-zero, pokerth, supertux, wesnoth, wesnoth-server), * gnu/packages/geo.scm (gplates), * gnu/packages/gnucash.scm (gnucash), * gnu/packages/graph.scm (python-graph-tool), * gnu/packages/graphics.scma (openshadinglanguage), * gnu/packages/i2p.scm (i2pd), * gnu/packages/image-viewers.scm (luminance-hdr), * gnu/packages/kde-graphics.scm (krita), * gnu/packages/mail.scm (astroid), * gnu/packages/medical.scm (orthanc, orthanc-mysql, orthanc-postgresql), * gnu/packages/messaging.scm (libphonenumber), * gnu/packages/mpd.scm (ncmpcpp), * gnu/packages/networking.scm (kismet), * gnu/packages/opencog.scm (cogutil), * gnu/packages/photo.scm (hugin), * gnu/packages/poedit.scm (poedit), * gnu/packages/radio.scm (gnuradio), * gnu/packages/rdf.scm (lucene++), * gnu/packages/serialization.scm (avro-cpp), * gnu/packages/simulation.scm (fenics-dolfin), * gnu/packages/version-control.scm (gource), * gnu/packages/video.scm (aegisub, mkvtoolnix), * gnu/packages/web.scm (websocketpp) [inputs]: Replace boost with boost-1.83. * gnu/packages/libreoffice.scm (libcmis): Update to 0.6.2-00a85bf6. (librevenge): Update to 0.0.5. [arguments]<#:configure-flags>: Remove reference to boost system component for which the compatibility stub has been removed. * gnu/packages/serialization.scm (msgpack-cxx): Update to 7.0.0. Change-Id: I247f3eaecde3de3fe227586b840f0312b4797ee1
358 lines
15 KiB
Scheme
358 lines
15 KiB
Scheme
;;; GNU Guix --- Functional package management for GNU
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;;; Copyright © 2020 Ricardo Wurmus <rekado@elephly.net>
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;;;
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;;; This file is part of GNU Guix.
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;;;
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;;; GNU Guix is free software; you can redistribute it and/or modify it
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;;; under the terms of the GNU General Public License as published by
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;;; the Free Software Foundation; either version 3 of the License, or (at
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;;; your option) any later version.
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;;;
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;;; GNU Guix is distributed in the hope that it will be useful, but
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;;; WITHOUT ANY WARRANTY; without even the implied warranty of
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;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;;; GNU General Public License for more details.
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;;;
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;;; You should have received a copy of the GNU General Public License
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;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
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(define-module (gnu packages opencog)
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#:use-module (gnu packages)
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#:use-module (gnu packages boost)
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#:use-module (gnu packages check)
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#:use-module (gnu packages databases)
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#:use-module (gnu packages guile)
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#:use-module (gnu packages language)
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#:use-module (gnu packages linux)
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#:use-module (gnu packages multiprecision)
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#:use-module (gnu packages pkg-config)
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#:use-module (gnu packages python)
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#:use-module ((guix licenses) #:prefix license:)
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#:use-module (guix packages)
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#:use-module (guix gexp)
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#:use-module (guix git-download)
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#:use-module (guix build-system cmake)
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#:use-module (guix utils))
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(define-public cogutil
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;; The last release was in 2016. Other OpenCog packages require a later
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;; version.
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(let ((commit "b07b41b2eaf01627c78b27f1f28bb09ef7086f8e")
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(revision "1"))
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(package
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(name "cogutil")
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(version (git-version "2.0.3" revision commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/opencog/cogutil")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1ymmcrinp0prlxsmxmwdjjl4kgaj7wzq39d5b1q2apgg94yfdhqb"))))
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(build-system cmake-build-system)
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(arguments
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(list
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#:modules '((guix build cmake-build-system)
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((guix build gnu-build-system) #:prefix gnu:)
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(guix build utils))
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#:phases
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#~(modify-phases %standard-phases
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(replace 'check
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(lambda* (#:key tests? #:allow-other-keys #:rest args)
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(when tests?
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(apply (assoc-ref gnu:%standard-phases 'check)
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#:tests? tests? #:test-target "tests" args)
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(for-each
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(lambda (file)
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(invoke file))
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(find-files "tests" "UTest$"))))))))
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(inputs
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(list boost-1.83))
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(native-inputs
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`(("cxxtest" ,cxxtest)
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("python" ,python-minimal)
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("pkg-config" ,pkg-config)))
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(home-page "https://github.com/opencog/cogutil/")
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(synopsis "Low-level C++ programming utilities used by OpenCog components")
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(description "The OpenCog utilities is a miscellaneous collection of C++
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utilities use for typical programming tasks in multiple OpenCog projects.")
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;; Either of these licenses.
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(license (list license:agpl3 license:asl2.0)))))
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(define-public atomspace
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;; The last release was in 2016 and doesn't build with our Boost package.
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(let ((commit "86c848dfc7135b3c47deb581f8da54a60f6711c9")
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(revision "1"))
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(package
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(name "atomspace")
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(version (git-version "5.0.3" revision commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/opencog/atomspace")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0vxzhszb0z8081li38hid07a5axzxyflsmq1mcn4b1k4z1j8ggch"))))
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(build-system cmake-build-system)
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(arguments
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(list
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#:configure-flags
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#~(list (string-append "-DGUILE_INCLUDE_DIR=" #$guile-2.2
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"/include/guile/2.2/")
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(string-append "-DGUILE_SITE_DIR=" #$output
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"/share/guile/site/2.2/"))
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#:modules '((guix build cmake-build-system)
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((guix build gnu-build-system) #:prefix gnu:)
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(guix build utils))
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#:phases
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#~(modify-phases %standard-phases
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(replace 'check
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(lambda* (#:key tests? #:allow-other-keys #:rest args)
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(when tests?
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(apply (assoc-ref gnu:%standard-phases 'check)
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#:tests? tests? #:test-target "tests" args)
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;; Failing tests.
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(for-each delete-file
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'("tests/matrix/VectorAPIUTest"
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"tests/scm/MultiAtomSpaceUTest"))
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(setenv "GUILE_LOAD_PATH" ".:opencog/scm")
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(for-each invoke
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(find-files "tests" "UTest$"))))))))
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(inputs
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(list boost cogutil gmp guile-2.2 postgresql))
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(native-inputs
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`(("cxxtest" ,cxxtest)
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("python" ,python-minimal)
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("pkg-config" ,pkg-config)))
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(home-page "https://github.com/opencog/atomspace/")
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(synopsis "OpenCog hypergraph database, query system and rule engine")
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(description "The OpenCog AtomSpace is an in-RAM @dfn{knowledge
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representation} (KR) database, an associated query engine and graph-re-writing
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system, and a rule-driven inferencing engine that can apply and manipulate
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sequences of rules to perform reasoning. It is a layer that sits on top of
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ordinary distributed (graph) databases, providing a large variety of advanced
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features not otherwise available.")
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(license license:agpl3))))
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(define-public cogserver
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;; There are no releases.
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(let ((commit "ec5f3b9590db0f6a085b5d0320f5d3710e0f1635")
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(revision "2"))
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(package
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(name "cogserver")
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(version (git-version "0" revision commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/opencog/cogserver")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1h0vcxb6n5dc654xqinqcxc7dxwcs6bsywgir8rhrqiykk760mzl"))))
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(build-system cmake-build-system)
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(arguments
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(list
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#:configure-flags
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#~(list (string-append "-DGUILE_INCLUDE_DIR=" #$guile-2.2
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"/include/guile/2.2/")
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(string-append "-DGUILE_SITE_DIR=" #$output
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"/share/guile/site/2.2/"))
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#:modules '((guix build cmake-build-system)
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((guix build gnu-build-system) #:prefix gnu:)
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(guix build utils))
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#:phases
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#~(modify-phases %standard-phases
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(replace 'check
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(lambda* (#:key tests? #:allow-other-keys #:rest args)
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(when tests?
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(apply (assoc-ref gnu:%standard-phases 'check)
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#:tests? tests? #:test-target "tests" args)
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;; Failing test.
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(delete-file "tests/shell/ShellUTest")
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(for-each invoke
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(find-files "tests" "UTest$"))))))))
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(inputs
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(list atomspace boost cogutil gmp guile-2.2))
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(native-inputs
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`(("cxxtest" ,cxxtest)
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("python" ,python-minimal)
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("pkg-config" ,pkg-config)))
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(home-page "https://github.com/opencog/cogserver/")
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(synopsis "OpenCog network server")
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(description "The OpenCog Cogserver is a network and job server for the
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OpenCog framework.")
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(license license:agpl3))))
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(define-public attention
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;; There are no releases.
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(let ((commit "87d43679280ce486cd6757765d2e1df6d502991d")
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(revision "1"))
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(package
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(name "attention")
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(version (git-version "0" revision commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/opencog/attention")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0sndslphicv6w9qpag168rqkxq5sf71l5qbfx6zhsd5bzlf5fhwv"))))
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(build-system cmake-build-system)
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(arguments
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(list
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#:configure-flags
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#~(list (string-append "-DGUILE_INCLUDE_DIR=" #$guile-2.2
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"/include/guile/2.2/")
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(string-append "-DGUILE_SITE_DIR=" #$output
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"/share/guile/site/2.2/"))
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#:modules '((guix build cmake-build-system)
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((guix build gnu-build-system) #:prefix gnu:)
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(guix build utils))
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#:phases
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#~(modify-phases %standard-phases
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(replace 'check
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(lambda* (#:key tests? #:allow-other-keys #:rest args)
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(when tests?
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(apply (assoc-ref gnu:%standard-phases 'check)
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#:tests? tests? #:test-target "tests" args)
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;; Failing tests.
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(for-each delete-file
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'("tests/attention/AttentionParamQueryUTest"
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"tests/attention/HebbianCreationModuleUTest"
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"tests/attention/ImportanceDiffusionUTest"))
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(for-each invoke
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(find-files "tests" "UTest$"))))))))
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(inputs
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(list atomspace
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boost
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cogserver
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cogutil
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gmp
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guile-2.2))
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(native-inputs
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`(("cxxtest" ,cxxtest)
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("python" ,python-minimal)
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("pkg-config" ,pkg-config)))
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(home-page "https://github.com/opencog/attention/")
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(synopsis "OpenCog attention allocation subsystem")
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(description "Attention Allocation is an OpenCog subsystem meant to
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control the application of processing and memory resources to specific
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tasks.")
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(license license:agpl3))))
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(define-public opencog
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;; There are no recent releases.
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(let ((commit "ceac90507610cb2d0ee98f97a2086865292b1204")
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(revision "1"))
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(package
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(name "opencog")
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(version (git-version "0.1.4" revision commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/opencog/opencog")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1j8wv910fvrmph370wv5pv2f4bc2s9vl6i7bw3pkmwbdhxkhjbhm"))))
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(build-system cmake-build-system)
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(arguments
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(list
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#:configure-flags
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#~(list (string-append "-DGUILE_INCLUDE_DIR=" #$guile-2.2
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"/include/guile/2.2/")
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(string-append "-DGUILE_SITE_DIR=" #$output
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"/share/guile/site/2.2/"))
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#:modules '((guix build cmake-build-system)
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((guix build gnu-build-system) #:prefix gnu:)
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(guix build utils))
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#:phases
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#~(modify-phases %standard-phases
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(replace 'check
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(lambda* (#:key tests? #:allow-other-keys #:rest args)
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(when tests?
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(apply (assoc-ref gnu:%standard-phases 'check)
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#:tests? tests? #:test-target "tests" args)
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(for-each invoke
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(find-files "tests" "UTest$"))))))))
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(inputs
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`(("attention" ,attention)
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("atomspace" ,atomspace)
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("boost" ,boost)
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("cogserver" ,cogserver)
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("cogutil" ,cogutil)
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("gmp" ,gmp)
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("guile" ,guile-2.2)
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("libuuid" ,util-linux "lib")
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("link-grammar" ,link-grammar)))
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(native-inputs
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`(("cxxtest" ,cxxtest)
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("python" ,python-minimal)
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("pkg-config" ,pkg-config)))
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(home-page "https://github.com/opencog/attention/")
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(synopsis "Framework for integrated artificial intelligence")
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(description "OpenCog is a framework for developing AI systems,
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especially appropriate for integrative multi-algorithm systems, and artificial
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general intelligence systems. It currently contains a functional core
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framework, and a number of cognitive agents at varying levels of completion,
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some already displaying interesting and useful functionalities alone and in
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combination.")
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(license license:agpl3))))
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(define-public agi-bio
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;; There are no releases.
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(let ((commit "b5c6f3d99e8cca3798bf0cdf2c32f4bdb8098efb")
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(revision "1"))
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(package
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(name "agi-bio")
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(version (git-version "0" revision commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/opencog/agi-bio")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0c3q0nhmd03nvqm1ih10y28n596cjvfhkcfvzw2fmz1sn3ywdah4"))))
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(build-system cmake-build-system)
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(arguments
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`(#:tests? #f ; there are none
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#:configure-flags
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(list
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(string-append "-DGUILE_INCLUDE_DIR="
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(assoc-ref %build-inputs "guile")
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"/include/guile/2.2/")
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(string-append "-DGUILE_SITE_DIR="
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(assoc-ref %outputs "out")
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"/share/guile/site/2.2/"))
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#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'fix-unqualified-load
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(lambda* (#:key outputs #:allow-other-keys)
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(substitute* "bioscience/bioscience.scm"
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(("\\(load \"bioscience/types/bioscience_types.scm\"\\)")
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(format #f "(load \"~a/bioscience/types/bioscience_types.scm\")"
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(string-append (assoc-ref outputs "out")
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"/share/guile/site/2.2/opencog"))))
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#t)))))
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(inputs
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(list atomspace cogutil gmp guile-2.2))
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(native-inputs
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`(("cxxtest" ,cxxtest)
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("python" ,python-minimal)
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("pkg-config" ,pkg-config)))
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(home-page "https://github.com/opencog/agi-bio")
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(synopsis "Genomic and proteomic data exploration and pattern mining")
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(description "This is a package for genomic and proteomic research using
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the OpenCog toolset with Guile. This includes experiments in applying pattern
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mining and other OpenCog components.")
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(license license:agpl3))))
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