mirror of
https://codeberg.org/guix/guix.git
synced 2026-01-25 03:55:08 -06:00
00d56b88eb
* gnu/packages/python-web.scm (python-tornado): Absorb definition of python-tornado-6. (python-tornado-5): New variable, inherit from python-tornado. (python-tornado-6): Deprecate variable. * gnu/packages/jupyter.scm (python-jupyterlite-core) * gnu/packages/jupyter.scm (python-pytest-jupyter) * gnu/packages/jupyter.scm (python-voila) * gnu/packages/python-xyz.scm (python-pypugjs) * gnu/packages/python-xyz.scm (python-tenacity): [native-inputs]: Remove python-tornado-6; add python-tornado. * gnu/packages/machine-learning.scm (kaldi-gstreamer-server): [inputs]: Remove python-tornado-6; add python-tornado. * gnu/packages/bioinformatics.scm (python-bulkvis) * gnu/packages/jupyter.scm (python-ipykernel) * gnu/packages/jupyter.scm (python-jupyter-client) * gnu/packages/jupyter.scm (python-jupyter-client-7) * gnu/packages/jupyter.scm (python-jupyter-server) * gnu/packages/jupyter.scm (python-nbclassic) * gnu/packages/jupyter.scm (python-nbdime) * gnu/packages/jupyter.scm (python-notebook) * gnu/packages/jupyter.scm (python-terminado) * gnu/packages/python-check.scm (python-pytest-tornasync) * gnu/packages/python-science.scm (python-distributed) * gnu/packages/python-xyz.scm (python-bokeh) * gnu/packages/python-xyz.scm (python-ipyparallel-bootstrap) * gnu/packages/python-xyz.scm (python-nbconvert) [propagated-inputs]: Remove python-tornado-6; add python-tornado. Change-Id: I437d73a0711c88e329666b6bc853f6332c277098
1924 lines
73 KiB
Scheme
1924 lines
73 KiB
Scheme
;;; GNU Guix --- Functional package management for GNU
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;;; Copyright © 2015 Federico Beffa <beffa@fbengineering.ch>
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;;; Copyright © 2016, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
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;;; Copyright © 2016, 2019, 2021-2025 Ricardo Wurmus <rekado@elephly.net>
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;;; Copyright © 2016, 2020, 2021 Efraim Flashner <efraim@flashner.co.il>
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;;; Copyright © 2016 Christopher Baines <mail@cbaines.net>
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;;; Copyright © 2018 Pierre-Antoine Rouby <pierre-antoine.rouby@inria.fr>
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;;; Copyright © 2018, 2019, 2021-2023 Ludovic Courtès <ludo@gnu.org>
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;;; Copyright © 2019, 2022 Andreas Enge <andreas@enge.fr>
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;;; Copyright © 2019 Edouard Klein <edk@beaver-labs.com>
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;;; Copyright © 2021 Hugo Lecomte <hugo.lecomte@inria.fr>
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;;; Copyright © 2021 Lars-Dominik Braun <lars@6xq.net>
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;;; Copyright © 2021 Nicolas Goaziou <mail@nicolasgoaziou.fr>
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;;; Copyright © 2021, 2022 Marius Bakke <marius@gnu.org>
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;;; Copyright © 2022 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
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;;; Copyright © 2022, 2024 Maxim Cournoyer <maxim.cournoyer@gmail.com>
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;;; Copyright © 2022 Maxime Devos <maximedevos@telenet.be>
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;;; Copyright © 2023 Antero Mejr <antero@mailbox.org>
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;;; Copyright © 2023 Greg Hogan <code@greghogan.com>
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;;; Copyright © 2024 Danny Milosavljevic <dannym@friendly-machines.com>
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;;; Copyright © 2024 Nicolas Graves <ngraves@ngraves.fr>
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;;; Copyright © 2024, 2025 Nicolas Graves <ngraves@ngraves.fr>
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;;; Copyright © 2024-2025 Sharlatan Hellseher <sharlatanus@gmail.com>
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;;; Copyright © 2025 Ghislain Vaillant <ghislain.vaillant@inria.fr>
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;;;
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;;; This file is part of GNU Guix.
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;;;
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;;; GNU Guix is free software; you can redistribute it and/or modify it
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;;; under the terms of the GNU General Public License as published by
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;;; the Free Software Foundation; either version 3 of the License, or (at
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;;; your option) any later version.
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;;;
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;;; GNU Guix is distributed in the hope that it will be useful, but
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;;; WITHOUT ANY WARRANTY; without even the implied warranty of
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;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;;; GNU General Public License for more details.
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;;;
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;;; You should have received a copy of the GNU General Public License
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;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
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(define-module (gnu packages jupyter)
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#:use-module ((guix licenses) #:prefix license:)
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#:use-module (guix gexp)
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#:use-module (guix packages)
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#:use-module (guix download)
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#:use-module (guix git-download)
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#:use-module (guix build-system cmake)
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#:use-module (guix build-system pyproject)
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#:use-module (guix build-system python)
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#:use-module (guix utils)
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#:use-module (gnu packages algebra)
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#:use-module (gnu packages bash)
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#:use-module (gnu packages check)
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#:use-module (gnu packages cpp)
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#:use-module (gnu packages docker)
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#:use-module (gnu packages linux)
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#:use-module (gnu packages monitoring)
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#:use-module (gnu packages networking)
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#:use-module (gnu packages pkg-config)
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#:use-module (gnu packages python)
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#:use-module (gnu packages python-build)
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#:use-module (gnu packages python-check)
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#:use-module (gnu packages python-crypto)
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#:use-module (gnu packages python-science)
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#:use-module (gnu packages python-xyz)
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#:use-module (gnu packages python-web)
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#:use-module (gnu packages qt)
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#:use-module (gnu packages rdf)
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#:use-module (gnu packages readline)
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#:use-module (gnu packages time)
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#:use-module (gnu packages xml)
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#:use-module (gnu packages tls)
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#:use-module (gnu packages ssh)
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#:use-module (gnu packages sphinx)
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#:use-module (gnu packages serialization)
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#:use-module (gnu packages version-control)
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#:use-module (gnu packages xorg))
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(define-public jupyter
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(package
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(name "jupyter")
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(version "1.0.0")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "jupyter" version))
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(sha256
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(base32
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"0pwf3pminkzyzgx5kcplvvbvwrrzd3baa7lmh96f647k30rlpp6r"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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#:tests? #f ;there are none.
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#:phases
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;; TODO python-team: Because python-jsonschema has an old
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;; python-webcolor. Remove this when python-team branch is merged.
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#~(modify-phases %standard-phases
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(delete 'sanity-check))))
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(native-inputs (list python-setuptools))
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(propagated-inputs
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(list python-ipykernel
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python-ipywidgets
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python-jupyter-console
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python-nbconvert
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python-notebook
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python-qtconsole))
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(home-page "https://jupyter.org")
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(synopsis "Web application for interactive documents")
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(description
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"The Jupyter Notebook is a web application that allows you to create and
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share documents that contain live code, equations, visualizations and
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explanatory text. Uses include: data cleaning and transformation, numerical
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simulation, statistical modeling, machine learning and much more.")
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(license license:bsd-3)))
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(define-public python-ipykernel
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(package
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(name "python-ipykernel")
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(version "7.1.0")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "ipykernel" version))
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(sha256
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(base32 "1nzhkkfcbvb53q0f40gqwk6qla3ddk3fmivdak1k0n9xaf4gr8sq"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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;; tests: 191 passed, 17 skipped, 1 deselected, 22 warnings
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#:test-flags
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;; ImportError: Cannot load backend 'tkagg' which requires the 'tk'
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;; interactive framework, as 'headless' is currently running
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#~(list "--deselect=tests/test_matplotlib_eventloops.py::test_matplotlib_gui[tk]")
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#:phases
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#~(modify-phases %standard-phases
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(add-after 'unpack 'fix-pytest-config
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(lambda _
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(substitute* "pyproject.toml"
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;; Do not fail on warnings.
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(("\"error\",") ""))))
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;; The deprecation warnings break the tests.
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(add-before 'check 'pre-check
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(lambda _
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;; jupyter-core demands this be set.
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(setenv "JUPYTER_PLATFORM_DIRS" "1")
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(setenv "HOME" "/tmp")))
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(add-after 'install 'set-python-file-name
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(lambda* (#:key inputs #:allow-other-keys)
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;; Record the absolute file name of the 'python' executable in
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;; 'kernel.json'.
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(substitute* (string-append #$output "/share/jupyter"
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"/kernels/python3/kernel.json")
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(("\"python\"")
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(format #f "~s" (search-input-file inputs
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"/bin/python3")))))))))
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(propagated-inputs
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(list python-comm
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python-debugpy
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python-ipython
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python-jupyter-client
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python-jupyter-core
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python-matplotlib-inline
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python-nest-asyncio
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python-packaging
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python-psutil
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python-pyzmq
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python-tornado
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python-traitlets))
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(inputs (list python)) ;for cross compilation
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(native-inputs
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(list python-flaky
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python-hatchling
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python-ipyparallel-bootstrap
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python-pytest
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python-pytest-asyncio
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python-pytest-cov
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python-pytest-timeout))
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(home-page "https://ipython.org")
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(synopsis "IPython Kernel for Jupyter")
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(description "This package provides the IPython kernel for Jupyter.")
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(license license:bsd-3)))
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;; Bootstrap variant of ipykernel, which uses the bootstrap jupyter-client to
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;; break the cycle between ipykernel and jupyter-client.
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(define-public python-ipykernel-bootstrap
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(let ((parent python-ipykernel))
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(hidden-package
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(package
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(inherit parent)
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(name "python-ipykernel-bootstrap")
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(arguments (list #:tests? #f
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;; The package should normally propagate ipykernel,
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;; left out here to break the cycle.
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#:phases #~(modify-phases %standard-phases
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(delete 'sanity-check))))
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(native-inputs (list python-hatchling))
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(propagated-inputs
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(modify-inputs (package-propagated-inputs parent)
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(replace "python-jupyter-client" python-jupyter-client-bootstrap)))))))
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(define-public python-jupytext
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(package
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(name "python-jupytext")
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(version "1.18.1")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/mwouts/jupytext")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32 "01vvi5aab7lahj57ng5v4svjw18xrlgnasz877lqvdf4m6cpi8s9"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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;; tests: 4016 passed, 173 skipped, 3 deselected, 1 warning
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#:test-flags
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#~(list
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;; Requires git.
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"--ignore=tests/external"
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;; Requires python-black.
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"--ignore=tests/functional/contents_manager"
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;; Failed: DID NOT RAISE <class 'ValueError'>.
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(string-append "--deselect=tests/functional/cli/test_source_is_newer.py"
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"::test_check_source_is_newer_when_using_jupytext_to")
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;; Failed: DID NOT RAISE <class 'jupytext.cli.SynchronousModificationError'>.
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(string-append "--deselect=tests/functional/cli/test_synchronous_changes.py"
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"::test_jupytext_to_raises_on_synchronous_edits")
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;; Failed: DID NOT RAISE <class 'jupytext.cli.SynchronousModificationError'>.
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(string-append "--deselect=tests/functional/cli/test_synchronous_changes.py"
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"::test_jupytext_sync_raises_on_synchronous_edits"))
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#:phases
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#~(modify-phases %standard-phases
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(add-before 'check 'pre-check
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(lambda _
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;; some tests fail when HOME=/homeless-shelter.
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(setenv "HOME" "/tmp")
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;; OSError: [Errno 18] Invalid cross-device link
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(setenv "TMPDIR" "/tmp"))))))
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(native-inputs
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(list python-hatchling
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python-jupyter-client
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python-jupyter-server
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python-pytest
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python-pytest-asyncio))
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(propagated-inputs
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(list python-markdown-it-py
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python-mdit-py-plugins
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python-nbformat
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python-packaging
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python-pyyaml))
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(home-page "https://jupytext.readthedocs.io/")
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(synopsis
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"Jupyter notebooks as Markdown documents, Julia, Python or R scripts")
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(description
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"Jupytext is a plugin for Jupyter that can save Jupyter notebooks as
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either Markdown files or scripts in many languages. Common use cases for
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Jupytext are:
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@itemize
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@item version control on Jupyter Notebooks
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@item editing, merging or refactoring notebooks in your favorite text editor
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@item applying Q&A checks on notebooks.
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@end itemize ")
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(license license:expat)))
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(define-public python-nbclassic
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(package
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(name "python-nbclassic")
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(version "1.0.0")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "nbclassic" version))
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(sha256
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(base32 "1qrhzazq10dz64y9mawr3ns595fsdhrj1wvbb42xhmcl66r1xq8a"))))
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(build-system pyproject-build-system)
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(propagated-inputs (list python-argon2-cffi
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python-ipykernel
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python-ipython-genutils
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python-jinja2
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python-jupyter-client
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python-jupyter-core
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python-jupyter-server
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python-nbconvert
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python-nbformat
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python-nest-asyncio
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python-notebook-shim
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python-prometheus-client
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python-pyzmq
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python-send2trash
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python-terminado
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python-tornado
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python-traitlets))
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(native-inputs (list python-nbval
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python-jupyter-packaging
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python-pytest
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python-pytest-cov
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python-pytest-jupyter
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python-pytest-tornasync
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python-requests
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python-requests-unixsocket2
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python-testpath))
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(home-page "https://github.com/jupyter/nbclassic")
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(synopsis "Jupyter Notebook as a Jupyter Server extension")
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(description "NbClassic provides a backwards compatible Jupyter Notebook
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interface that you can install side-by-side with the latest versions: That
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way, you can fearlessly upgrade without worrying about your classic extensions
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and customizations breaking. Because NbClassic provides the classic interface
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on top of the new Jupyter Server backend, it can coexist with other frontends
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like JupyterLab and Notebook 7 in the same installation. NbClassic preserves
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the custom classic notebook experience under a new set of URL endpoints, under
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the namespace @code{/nbclassic/}.")
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(license license:bsd-3)))
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(define-public python-notebook
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(package
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(name "python-notebook")
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;; XXX: Newer version requires Jupyterlab, see:
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;; <https://codeberg.org/guix/guix/pulls/2073>.
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(version "6.5.7")
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(source (origin
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(method url-fetch)
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(uri (pypi-uri "notebook" version))
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(sha256
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(base32
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"1r38fwr0r4xgkz8y27w3xyz2dk97ih5azba28jylyqxcvw8r1sq4"))))
|
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(build-system pyproject-build-system)
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(arguments
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(list
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;; tests: 307 passed, 7 skipped, 16 deselected, 9 warnings
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#:test-flags
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'(list "-k" (string-append
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;; TODO: This tests fails because nbconvert does not
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;; list "python" as a format.
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"not test_list_formats"
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;; AssertionError: Lists differ:
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" and not test_disable"
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" and not test_enable"
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" and not test_merge_config"
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" and not test_load_ordered"
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" and not test_list_running_sock_servers"
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" and not test_run"
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;; tornado.simple_httpclient.HTTPTimeoutError: Timeout
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;; during request
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" and not test_connections")
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;; These tests require a browser.
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"--ignore=notebook/tests/selenium")
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#:phases
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'(modify-phases %standard-phases
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(add-after 'unpack 'use-our-home-for-tests
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(lambda _
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;; The 'get_patch_env' function in this file reads:
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;; 'HOME': cls.home_dir
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;; but for some reason, that definition of HOME is not what the
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;; GLib/GIO trash mechanism honors, which would cause test
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;; failures. Instead, set 'HOME' here to an existing directory
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;; and let the tests honor it.
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(substitute* "notebook/tests/launchnotebook.py"
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(("'HOME': .*," all)
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(string-append "# " all "\n")))
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(setenv "HOME" (getcwd))))
|
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;; Because python-jsonschema has an old python-webcolor. Remove this
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;; when python-team branch is merged.
|
|
(delete 'sanity-check)
|
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(add-before 'check 'pre-check
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(lambda _
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;; Interferes with test expectations.
|
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(unsetenv "JUPYTER_CONFIG_PATH")
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;; Some tests do not expect all files to be installed in the
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;; same directory, but JUPYTER_PATH contains multiple entries.
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(unsetenv "JUPYTER_PATH"))))))
|
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(propagated-inputs
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(list python-argon2-cffi
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python-ipykernel
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python-ipython-genutils
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python-jinja2
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python-jupyter-client-7
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python-jupyter-core
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python-nest-asyncio
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python-nbclassic
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python-nbconvert
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|
python-nbformat
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|
python-prometheus-client
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|
python-pyzmq
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|
python-send2trash
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python-terminado
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|
python-tornado
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|
python-traitlets))
|
|
(native-inputs
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(list python-coverage
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|
python-jupyter-server
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|
python-nbval
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|
python-pytest
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|
python-pytest-cov
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|
python-requests
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|
python-requests-unixsocket2
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|
python-setuptools
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|
python-wheel))
|
|
(home-page "https://jupyter.org/")
|
|
(synopsis "Web-based notebook environment for interactive computing")
|
|
(description
|
|
"The Jupyter HTML notebook is a web-based notebook environment for
|
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interactive computing.")
|
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(license license:bsd-3)))
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|
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(define-public python-notebook-shim
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|
(package
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(name "python-notebook-shim")
|
|
(version "0.2.4")
|
|
(source
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|
(origin
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|
(method url-fetch)
|
|
(uri (pypi-uri "notebook_shim" version))
|
|
(sha256
|
|
(base32 "1jrqqrm5xjwsx13plyyh7wybb1g71yrzaqa3l9y3162xnshwzcml"))))
|
|
(build-system pyproject-build-system)
|
|
(propagated-inputs (list python-jupyter-server))
|
|
(native-inputs
|
|
(list python-hatchling
|
|
python-pytest
|
|
python-pytest-console-scripts
|
|
python-pytest-jupyter
|
|
python-pytest-tornasync))
|
|
(home-page "https://pypi.org/project/notebook-shim/")
|
|
(synopsis "Shim layer for notebook traits and config")
|
|
(description
|
|
"This project provides a way for JupyterLab and other frontends to switch
|
|
to Jupyter Server for their Python Web application backend.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-jupyter-client
|
|
(package
|
|
(name "python-jupyter-client")
|
|
(version "8.7.0")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "jupyter_client" version))
|
|
(sha256
|
|
(base32 "07akcardg15d6c21x3g8yjj8gwz1lyinf3qrb6g200dykhnj2mrk"))))
|
|
(build-system pyproject-build-system)
|
|
(arguments
|
|
(list
|
|
;; tests: 227 passed, 7 skipped, 27 warnings
|
|
#:tests? (not (%current-target-system))
|
|
#:phases
|
|
#~(modify-phases %standard-phases
|
|
(add-after 'unpack 'fix-pytest-config
|
|
(lambda _
|
|
(substitute* "pyproject.toml"
|
|
;; Do not fail on warnings.
|
|
(("\"error\",") ""))))
|
|
(add-before 'check 'pre-check
|
|
(lambda _
|
|
;; Some tests try to write to $HOME.
|
|
(setenv "HOME" "/tmp")
|
|
;; jupyter-core demands this be set.
|
|
(setenv "JUPYTER_PLATFORM_DIRS" "1")))
|
|
(add-after 'check 'fix-syntax-error
|
|
;; Hatchling seems to generate entry scripts with invalid imports.
|
|
(lambda _
|
|
(substitute* (string-append #$output "/bin/.jupyter-kernelspec-real")
|
|
(("import KernelSpecApp.launch_instance") "import KernelSpecApp")))))))
|
|
(native-inputs
|
|
(list python-anyio
|
|
python-hatchling
|
|
python-ipykernel-bootstrap
|
|
python-pytest
|
|
python-pytest-jupyter-minimal
|
|
python-pytest-timeout))
|
|
(inputs
|
|
(list iproute ;ip jupyter_client/localinterfaces.py
|
|
net-tools ;ifconfig jupyter_client/localinterfaces.py
|
|
openssh)) ;ssh jupyter_client/ssh/tunnel.py
|
|
(propagated-inputs
|
|
(list python-dateutil
|
|
python-jupyter-core
|
|
python-pyzmq
|
|
python-tornado
|
|
python-traitlets))
|
|
(home-page "https://jupyter.org/")
|
|
(synopsis "Jupyter protocol implementation and client libraries")
|
|
(description
|
|
"The @code{jupyter_client} package contains the reference implementation
|
|
of the Jupyter protocol. It also provides client and kernel management APIs
|
|
for working with kernels, and the @code{jupyter kernelspec} entrypoint for
|
|
installing @code{kernelspec}s for use with Jupyter frontends.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-jupyter-client-7
|
|
(package
|
|
(inherit python-jupyter-client)
|
|
(name "python-jupyter-client")
|
|
(version "7.4.9")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "jupyter_client" version))
|
|
(sha256
|
|
(base32 "14nkh0w0q5xfjqc6rgnbx7zbjajmb9m63q90iznpmw3i87h2igjj"))))
|
|
;; tests: 180 passed, 4 skipped, 1 warning
|
|
(native-inputs
|
|
(list python-hatchling
|
|
python-ipykernel-bootstrap
|
|
python-pytest
|
|
python-pytest-asyncio
|
|
python-pytest-jupyter-minimal
|
|
python-pytest-timeout))
|
|
(propagated-inputs
|
|
(list python-dateutil
|
|
python-entrypoints
|
|
python-jupyter-core
|
|
python-nest-asyncio
|
|
python-pyzmq
|
|
python-tornado
|
|
python-traitlets))))
|
|
|
|
;; Bootstrap variant of jupyter-client, which breaks the loop between ipykernel
|
|
;; and jupyter-client by removing the former from its native-inputs and
|
|
;; disabling tests.
|
|
(define-public python-jupyter-client-bootstrap
|
|
(hidden-package
|
|
(package/inherit python-jupyter-client
|
|
(name "python-jupyter-client-bootstrap")
|
|
(arguments
|
|
(substitute-keyword-arguments (package-arguments python-jupyter-client)
|
|
((#:tests? _) #f)))
|
|
(native-inputs
|
|
(list python-hatchling)))))
|
|
|
|
(define-public python-jupyter-console
|
|
(package
|
|
(name "python-jupyter-console")
|
|
(version "6.6.3")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "jupyter_console" version))
|
|
(sha256
|
|
(base32
|
|
"0f9mllaavanqlimiv9sxxmqrmdb961p89prcyanvzbc73krlnsjn"))))
|
|
(build-system pyproject-build-system)
|
|
(arguments
|
|
(list
|
|
#:test-flags
|
|
;; ModuleNotFoundError: No module named 'traitlets'
|
|
#~(list "--deselect=jupyter_console/tests/test_console.py::test_generate_config")
|
|
#:phases
|
|
#~(modify-phases %standard-phases
|
|
(add-before 'check 'pre-check
|
|
(lambda _
|
|
(setenv "HOME" "/tmp"))))))
|
|
(native-inputs
|
|
(list python-flaky
|
|
python-hatchling
|
|
python-pytest))
|
|
(propagated-inputs
|
|
(list python-ipykernel
|
|
python-ipython
|
|
python-jupyter-client
|
|
python-jupyter-core
|
|
python-prompt-toolkit
|
|
python-pygments
|
|
python-pyzmq
|
|
python-traitlets))
|
|
(home-page "https://jupyter.org")
|
|
(synopsis "Jupyter terminal console")
|
|
(description "This package provides a terminal-based console frontend for
|
|
Jupyter kernels. It also allows for console-based interaction with non-Python
|
|
Jupyter kernels such as IJulia and IRKernel.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-jupyter-core
|
|
(package
|
|
(name "python-jupyter-core")
|
|
(version "5.9.1")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (string-append (pypi-uri "jupyter_core" version)))
|
|
(sha256
|
|
(base32 "022mbd3dyg3chkcgg77qyn8mrzw9s05mhzv5rv1nd59v63zsl2ad"))))
|
|
(build-system pyproject-build-system)
|
|
(arguments
|
|
(list
|
|
;; tests: 73 passed, 20 skipped, 4 deselected
|
|
#:test-flags
|
|
;; These tests try to unset environment variables, search for `jupyter`,
|
|
;; write test files and fail eventually.
|
|
#~(list "--deselect=tests/test_command.py::test_not_on_path"
|
|
"--deselect=tests/test_command.py::test_path_priority"
|
|
"--deselect=tests/test_command.py::test_argv0"
|
|
;; Expecting `pip` in the PATH.
|
|
"--deselect=tests/test_troubleshoot.py::test_troubleshoot")
|
|
#:phases
|
|
#~(modify-phases %standard-phases
|
|
;; Migration is running whenever etc/jupyter exists, but the
|
|
;; Guix-managed directory will never contain any migratable IPython
|
|
;; config files and cannot be written to anyway, so just pretend we
|
|
;; already did that.
|
|
(add-after 'install 'disable-migration
|
|
(lambda _
|
|
(let* ((etc (string-append #$output "/etc/jupyter"))
|
|
(migrated (string-append etc "/migrated")))
|
|
(mkdir-p etc)
|
|
(with-output-to-file migrated
|
|
(const (display "\n"))))))
|
|
(add-before 'check 'pre-check
|
|
(lambda _
|
|
(setenv "HOME" "/tmp"))))))
|
|
(native-inputs
|
|
(list python-hatchling
|
|
python-pytest))
|
|
(propagated-inputs
|
|
(list python-platformdirs
|
|
python-traitlets))
|
|
;; This package provides the `jupyter` binary and thus also exports the
|
|
;; search paths.
|
|
(native-search-paths
|
|
(list (search-path-specification
|
|
(variable "JUPYTER_CONFIG_PATH")
|
|
(files '("etc/jupyter")))
|
|
(search-path-specification
|
|
(variable "JUPYTER_PATH")
|
|
(files '("share/jupyter")))))
|
|
(home-page "https://jupyter.org/")
|
|
(synopsis "Jupyter base package")
|
|
(description
|
|
"Jupyter core is the base package on which Jupyter projects rely.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-jupyter-lsp
|
|
(package
|
|
(name "python-jupyter-lsp")
|
|
(version "2.3.0")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "jupyter_lsp" version))
|
|
(sha256
|
|
(base32 "0i825shcn9d3f7a5zmvcj1p87s5wgpqn8cyphjvqz1nw769sb2j5"))))
|
|
(build-system pyproject-build-system)
|
|
(arguments
|
|
(list
|
|
;; tests: 63 passed, 8 skipped, 1 deselected, 20 warnings
|
|
#:test-flags
|
|
;; Network access is required or most tests failed.
|
|
#~(list "--ignore=jupyter_lsp/tests/test_listener.py"
|
|
"--ignore=jupyter_lsp/tests/test_session.py"
|
|
;; No R language server is present.
|
|
"-k" "not test_r_package_detection")
|
|
#:phases
|
|
#~(modify-phases %standard-phases
|
|
;; Some tests require a writable HOME
|
|
(add-before 'check 'set-HOME
|
|
(lambda _ (setenv "HOME" "/tmp"))))))
|
|
(native-inputs
|
|
(list python-pytest
|
|
python-pytest-asyncio
|
|
python-setuptools))
|
|
(propagated-inputs (list python-jupyter-server))
|
|
(home-page "https://pypi.org/project/jupyter-lsp/")
|
|
(synopsis "Multi-Language Server WebSocket proxy for Jupyter Notebook/Lab server")
|
|
(description
|
|
"This package provides a multi-language server WebSocket proxy for
|
|
Jupyter Notebook/Lab server. It provides coding assistance for
|
|
JupyterLab (code navigation, hover suggestions, linters, autocompletion, and
|
|
rename) using the Language Server Protocol.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-jupyter-kernel-test
|
|
(package
|
|
(name "python-jupyter-kernel-test")
|
|
(version "0.7.0")
|
|
(source
|
|
(origin
|
|
(method git-fetch)
|
|
(uri (git-reference
|
|
(url "https://github.com/jupyter/jupyter_kernel_test")
|
|
(commit (string-append "v" version))))
|
|
(file-name (git-file-name name version))
|
|
(sha256
|
|
(base32 "1xp8496kr79rvb5b2m7kgwzdppfcmn4mqc0anjkqk7d91hr1wssf"))))
|
|
(build-system pyproject-build-system)
|
|
(arguments
|
|
(list
|
|
#:phases
|
|
#~(modify-phases %standard-phases
|
|
(replace 'check
|
|
(lambda* (#:key tests? #:allow-other-keys)
|
|
(when tests?
|
|
(invoke "python" "-m" "unittest" "-v")))))))
|
|
(native-inputs
|
|
(list python-hatchling
|
|
python-ipykernel))
|
|
(propagated-inputs
|
|
(list python-jsonschema
|
|
python-jupyter-client))
|
|
(home-page "https://github.com/jupyter/jupyter_kernel_test")
|
|
(synopsis "Test Jupyter kernels")
|
|
(description
|
|
"@code{jupyter_kernel_test} is a tool for testing Jupyter kernels. It
|
|
tests kernels for successful code execution and conformance with the
|
|
@uref{https://jupyter-client.readthedocs.io/en/latest/messaging.html, Jupyter
|
|
Messaging Protocol}.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-pari-jupyter
|
|
(package
|
|
(name "python-pari-jupyter")
|
|
(version "1.4.3")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "pari-jupyter" version))
|
|
(sha256
|
|
(base32 "178v8y3sj3lh3y8i7krbmjqvmv7549bg535fqq1q6axr0lfjknbw"))))
|
|
(build-system pyproject-build-system)
|
|
(arguments
|
|
(list #:tests? #f)) ; there are no proper tests
|
|
(native-inputs
|
|
(list python-cython
|
|
python-jupyter-kernel-test
|
|
python-setuptools
|
|
python-wheel))
|
|
(inputs
|
|
(list pari-gp
|
|
readline))
|
|
(propagated-inputs
|
|
(list python-ipykernel))
|
|
(home-page "https://github.com/sagemath/pari-jupyter")
|
|
(synopsis "Jupyter kernel for PARI/GP")
|
|
(description "The package provides a PARI/GP kernel for Jupyter.")
|
|
(license license:gpl3+)))
|
|
|
|
(define-public python-pytest-jupyter
|
|
(package
|
|
(name "python-pytest-jupyter")
|
|
(version "0.10.1")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "pytest_jupyter" version))
|
|
(sha256
|
|
(base32 "114y9py29j6p2iymhc3vj55x65gg1ncbhwal5mads0g2z7p59pq0"))))
|
|
(build-system pyproject-build-system)
|
|
(arguments
|
|
(list
|
|
#:test-flags
|
|
;; This requires python-jupyter-server, which itself requires this
|
|
;; package.
|
|
'(list "--ignore=tests/test_jupyter_server.py")
|
|
#:phases
|
|
'(modify-phases %standard-phases
|
|
;; The jupyter_server tests requires python-jupyter-server, which
|
|
;; itself requires this package.
|
|
(add-after 'unpack 'disable-tests
|
|
(lambda _
|
|
(substitute* "tests/conftest.py"
|
|
(("\"pytest_jupyter.jupyter_server\",") ""))))
|
|
;; Some tests require a writable HOME
|
|
(add-before 'check 'set-HOME
|
|
(lambda _ (setenv "HOME" "/tmp")))
|
|
(add-after 'unpack 'ignore-deprecation-warnings
|
|
(lambda _
|
|
(substitute* "pyproject.toml"
|
|
((" \"module:datetime.*" m)
|
|
(string-append m "\n\"ignore:zmq.eventloop.ioloop is deprecated:DeprecationWarning\","))))))))
|
|
(propagated-inputs (list python-jupyter-core python-nbformat))
|
|
(native-inputs (list python-hatchling
|
|
python-ipykernel
|
|
python-pytest
|
|
python-pytest-timeout
|
|
python-tornado))
|
|
(home-page "https://jupyter.org")
|
|
(synopsis "Pytest plugin for testing Jupyter libraries and extensions.")
|
|
(description
|
|
"This package provides a pytest plugin for testing Jupyter libraries and
|
|
extensions.")
|
|
(license license:bsd-4)))
|
|
|
|
(define-public python-pytest-jupyter-minimal
|
|
(package/inherit python-pytest-jupyter
|
|
(name "python-pytest-jupyter-minimal")
|
|
(arguments
|
|
(list #:tests? #f))
|
|
(native-inputs
|
|
(list python-hatchling))
|
|
(propagated-inputs
|
|
(list python-jupyter-core))))
|
|
|
|
(define-public python-terminado
|
|
(package
|
|
(name "python-terminado")
|
|
(version "0.18.1")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "terminado" version))
|
|
(sha256
|
|
(base32
|
|
"0bpxag3n0148vsgmi6wh3ynmprykazzqys0lfxgpdr2xp32g42fy"))))
|
|
(build-system pyproject-build-system)
|
|
(arguments
|
|
(list
|
|
#:test-flags #~(list "-W" "default"))) ;taken from pyproject.toml
|
|
(native-inputs
|
|
(list python-hatchling
|
|
python-pytest
|
|
python-pytest-timeout))
|
|
(propagated-inputs
|
|
(list python-ptyprocess
|
|
python-tornado))
|
|
(home-page "https://github.com/jupyter/terminado")
|
|
(synopsis "Terminals served to term.js using Tornado websockets")
|
|
(description "This package provides a Tornado websocket backend for the
|
|
term.js Javascript terminal emulator library.")
|
|
(license license:bsd-2)))
|
|
|
|
(define-public xeus
|
|
(package
|
|
(name "xeus")
|
|
(version "2.4.1")
|
|
(source (origin
|
|
(method git-fetch)
|
|
(uri (git-reference
|
|
(url "https://github.com/jupyter-xeus/xeus")
|
|
(commit version)))
|
|
(sha256
|
|
(base32
|
|
"1k1h416qkw3yra6ayfa61nv0v4ify2wvp5x27slgbcw6c88w7fb1"))
|
|
(file-name (git-file-name name version))))
|
|
(build-system cmake-build-system)
|
|
(arguments
|
|
'(#:tests? #f
|
|
#:configure-flags '("-DBUILD_STATIC_LIBS=OFF"
|
|
"-DDISABLE_ARCH_NATIVE=ON"))) ;no '-march=native'
|
|
(native-inputs
|
|
(list pkg-config
|
|
;; The following inputs are used by the test suite.
|
|
googletest
|
|
python-pytest
|
|
python-wrapper
|
|
python-jupyter-kernel-test
|
|
python-jupyter-client))
|
|
(inputs
|
|
(list xtl
|
|
nlohmann-json
|
|
cppzmq
|
|
zeromq
|
|
openssl
|
|
`(,util-linux "lib"))) ;libuuid
|
|
(home-page "https://quantstack.net/xeus")
|
|
(synopsis "C++ implementation of the Jupyter Kernel protocol")
|
|
(description
|
|
"@code{xeus} is a library meant to facilitate the implementation of
|
|
kernels for Jupyter. It takes the burden of implementing the Jupyter Kernel
|
|
protocol so developers can focus on implementing the interpreter part of the
|
|
kernel.
|
|
|
|
Several Jupyter kernels are built upon @code{xeus}, such as @code{xeus-cling},
|
|
a kernel for the C++ programming language, and @code{xeus-python}, an
|
|
alternative Python kernel for Jupyter.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-jupyterlab-pygments
|
|
(package
|
|
(name "python-jupyterlab-pygments")
|
|
(version "0.1.2") ;newer versions requires Node.js packages
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "jupyterlab_pygments" version))
|
|
(sha256
|
|
(base32
|
|
"0ij14mmnc39nmf84i0av6j9glazjic7wzv1qyhr0j5966s3s1kfg"))))
|
|
(build-system pyproject-build-system)
|
|
(arguments '(#:tests? #false)) ; there are no tests
|
|
(native-inputs
|
|
(list python-setuptools))
|
|
(propagated-inputs
|
|
(list python-pygments))
|
|
(home-page "https://jupyter.org")
|
|
(synopsis "Pygments theme using JupyterLab CSS variables")
|
|
(description
|
|
"This package contains a syntax coloring theme for pygments making use of
|
|
the JupyterLab CSS variables.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-jupyterlab-server
|
|
(package
|
|
(name "python-jupyterlab-server")
|
|
(version "2.27.1")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "jupyterlab_server" version))
|
|
(sha256
|
|
(base32 "07b3m34akrf79xpaim9cymhsac0ry5ry7if998lcfxmn173mlyq9"))))
|
|
(build-system pyproject-build-system)
|
|
(arguments
|
|
(list
|
|
#:test-flags
|
|
;; XXX: These tests appear to fail due to the lack of
|
|
;; locales.
|
|
'(list "-k" "not locale and not language")
|
|
#:phases
|
|
'(modify-phases %standard-phases
|
|
(add-after 'unpack 'ignore-deprecation-warnings
|
|
(lambda _
|
|
(substitute* "pyproject.toml"
|
|
((" \"module:datetime.*" m)
|
|
(string-append
|
|
m
|
|
"\n\"ignore:zmq.eventloop.ioloop is deprecated:DeprecationWarning\","
|
|
"\n\"ignore:There is no current event loop:DeprecationWarning\","
|
|
"\n\"ignore:Spec is deprecated. Use SchemaPath from jsonschema-path package.:DeprecationWarning\"," )))))
|
|
(add-before 'check 'set-HOME
|
|
(lambda _ (setenv "HOME" "/tmp"))))))
|
|
(propagated-inputs
|
|
(list python-babel
|
|
python-jinja2
|
|
python-json5
|
|
python-jsonschema
|
|
python-jupyter-server
|
|
python-packaging
|
|
python-requests))
|
|
(native-inputs
|
|
(list python-hatchling
|
|
python-ipykernel
|
|
python-openapi-core
|
|
python-openapi-spec-validator
|
|
python-pytest
|
|
python-pytest-console-scripts
|
|
python-pytest-cov
|
|
python-pytest-jupyter
|
|
python-pytest-timeout
|
|
python-requests-mock
|
|
python-ruamel.yaml
|
|
python-strict-rfc3339
|
|
python-werkzeug
|
|
python-wheel))
|
|
(home-page "https://jupyter.org")
|
|
(synopsis "Server components for JupyterLab applications")
|
|
(description "JupyterLab Server sits between JupyterLab and Jupyter
|
|
Server, and provides a set of REST API handlers and utilities that are used by
|
|
JupyterLab. It is a separate project in order to accommodate creating
|
|
JupyterLab-like applications from a more limited scope.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-jupyter-events
|
|
(package
|
|
(name "python-jupyter-events")
|
|
(version "0.10.0")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "jupyter_events" version))
|
|
(sha256
|
|
(base32 "08jyhj16drl3hg594gr677bc5q991lpd4khlhb3jx26csclq42v7"))))
|
|
(build-system pyproject-build-system)
|
|
(arguments
|
|
;; This passes the whole command line to shutil.which, instead of just
|
|
;; the executable.
|
|
(list #:test-flags '(list "--ignore=tests/test_cli.py")))
|
|
(propagated-inputs (list python-jsonschema
|
|
python-json-logger
|
|
python-pyyaml
|
|
python-referencing
|
|
python-rich
|
|
python-rfc3339-validator
|
|
python-rfc3986-validator
|
|
python-traitlets))
|
|
(native-inputs (list python-click
|
|
python-hatchling
|
|
python-pytest
|
|
python-pytest-asyncio
|
|
python-pytest-console-scripts))
|
|
(home-page "https://pypi.org/project/jupyter-events/")
|
|
(synopsis "Jupyter Event System library")
|
|
(description "Jupyter Events enables Jupyter Python
|
|
Applications (e.g. Jupyter Server, JupyterLab Server, JupyterHub, etc.) to
|
|
emit events—structured data describing things happening inside the
|
|
application. Other software (e.g. client applications like JupyterLab) can
|
|
listen and respond to these events.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-jupyter-packaging
|
|
(package
|
|
(name "python-jupyter-packaging")
|
|
(version "0.12.0")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "jupyter_packaging" version))
|
|
(sha256
|
|
(base32
|
|
"1b7ssc627vgrdl21c09w9sxk5fc1ps3g7f70laxag4yw1bb5ax5j"))))
|
|
(build-system pyproject-build-system)
|
|
(arguments
|
|
(list
|
|
#:phases
|
|
#~(modify-phases %standard-phases
|
|
(add-before 'check 'configure-tests
|
|
(lambda* (#:key tests? #:allow-other-keys)
|
|
(when tests?
|
|
;; Disable isolation so that the package environment can be
|
|
;; setup without connectivity.
|
|
(setenv "SOURCE_DATE_EPOCH" "315532800")
|
|
(substitute* "tests/test_build_api.py"
|
|
(("\"-m\", \"build\"" all)
|
|
(string-append all ", \"--no-isolation\"")))))))))
|
|
(propagated-inputs
|
|
(list python-deprecation python-packaging python-setuptools
|
|
python-tomlkit python-wheel))
|
|
(native-inputs
|
|
(list python-pypa-build
|
|
python-pytest
|
|
python-pytest-mock
|
|
python-setuptools))
|
|
(home-page "https://jupyter.org")
|
|
(synopsis "Jupyter packaging utilities")
|
|
(description "This package provides tools to help build and install
|
|
Jupyter Python packages that require a pre-build step that may include
|
|
JavaScript build steps.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-hatch-jupyter-builder
|
|
(package
|
|
(name "python-hatch-jupyter-builder")
|
|
(version "0.9.1")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "hatch_jupyter_builder" version))
|
|
(sha256
|
|
(base32 "1baqk80c5ddhksh73l48mb59vvaaa2ldrs65k6vldii4s6c829vr"))))
|
|
(build-system pyproject-build-system)
|
|
(arguments
|
|
;; Don't attempt to build anything, because we don't have network access
|
|
;; anyway.
|
|
(list #:test-flags '(list "-k" "not test_hatch_build")))
|
|
(propagated-inputs (list python-hatchling))
|
|
(native-inputs (list python-pytest
|
|
python-pytest-mock
|
|
python-tomli))
|
|
(home-page "https://github.com/jupyterlab/hatch-jupyter-builder")
|
|
(synopsis "Hatch plugin to help build Jupyter packages")
|
|
(description
|
|
"This package provides a hatch plugin to help build Jupyter packages.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-jupyter-server
|
|
(package
|
|
(name "python-jupyter-server")
|
|
(version "2.14.0")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "jupyter_server" version))
|
|
(sha256
|
|
(base32
|
|
"0xz69anflhib514lgpdrs0ppmbwp13zbg4vwzls3820jlp7594b5"))))
|
|
(build-system pyproject-build-system)
|
|
(arguments
|
|
(list
|
|
#:test-flags
|
|
;; Integration tests require a server.
|
|
'(list "-m" "not integration_test"
|
|
;; This test fails just like the shutil test in
|
|
;; python-jupyter-events fails. Odd, that.
|
|
"-k" "not test_server_extension_list")
|
|
#:phases
|
|
#~(modify-phases %standard-phases
|
|
(add-after 'unpack 'ignore-deprecation-warnings
|
|
(lambda _
|
|
(substitute* "pyproject.toml"
|
|
((" \"ignore:datetime.*" m)
|
|
(string-append m "\n\"ignore:zmq.eventloop.ioloop is deprecated:DeprecationWarning\","
|
|
"\n\"ignore:There is no current event loop:DeprecationWarning\","
|
|
"\n\"ignore:unclosed event loop:ResourceWarning\","
|
|
;; From tornado
|
|
"\n\"ignore:unclosed <socket.socket:ResourceWarning\",")))))
|
|
(add-before 'check 'pre-check
|
|
(lambda _
|
|
(let ((home (string-append (getcwd) "/guix-home")))
|
|
(setenv "HOME" home))
|
|
;; Add jupyter-server executable to PATH.
|
|
(setenv "PATH"
|
|
(string-append #$output "/bin:" (getenv "PATH"))))))))
|
|
(propagated-inputs
|
|
(list python-anyio
|
|
python-argon2-cffi
|
|
python-jinja2
|
|
python-jupyter-client
|
|
python-jupyter-core
|
|
python-jupyter-events
|
|
python-jupyter-server-terminals
|
|
python-nbconvert
|
|
python-nbformat
|
|
python-overrides
|
|
python-packaging
|
|
python-prometheus-client
|
|
python-pyzmq
|
|
python-send2trash
|
|
python-terminado
|
|
python-tornado
|
|
python-traitlets
|
|
python-websocket-client))
|
|
(native-inputs
|
|
(list python-flaky
|
|
python-hatchling
|
|
python-hatch-jupyter-builder
|
|
python-ipykernel
|
|
python-pytest
|
|
python-pytest-console-scripts
|
|
python-pytest-jupyter
|
|
python-pytest-timeout
|
|
python-requests))
|
|
(home-page "https://jupyter.org")
|
|
(synopsis "Core services, APIs, and REST endpoints for Jupyter web applications")
|
|
(description
|
|
"This package provides the backend—i.e. core services, APIs, and REST
|
|
endpoints—to Jupyter web applications.")
|
|
(license license:expat)))
|
|
|
|
(define-public python-jupyter-server-terminals
|
|
(package
|
|
(name "python-jupyter-server-terminals")
|
|
(version "0.5.3")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "jupyter_server_terminals" version))
|
|
(sha256
|
|
(base32 "0sajiadhwncrr0inzzkrs7l1xc6jmw9b5zfw1v79l3i2cx8jkq2s"))))
|
|
(build-system pyproject-build-system)
|
|
;; The tests require python-jupyter-server, but python-jupyter-server
|
|
;; needs this package.
|
|
(arguments (list #:tests? #false))
|
|
(propagated-inputs (list python-terminado))
|
|
(native-inputs
|
|
(list python-hatchling))
|
|
(home-page "https://pypi.org/project/jupyter-server-terminals/")
|
|
(synopsis "Jupyter Server extension providing terminals")
|
|
(description
|
|
"This package provides a Jupyter Server extension providing terminals.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-jupyterlab-widgets
|
|
(package
|
|
(name "python-jupyterlab-widgets")
|
|
;; XXX: Newer version requires python-jupyterlab, see guix/guix#2073.
|
|
(version "3.0.12")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "jupyterlab_widgets" version))
|
|
(sha256
|
|
(base32 "1bi4ry8pfj27n3acm21vaq4iiq60i0ci4dqhcdr8li2zx3zc0fk2"))))
|
|
(build-system pyproject-build-system)
|
|
(arguments
|
|
(list #:tests? #f)) ;no tests in PyPI
|
|
(native-inputs
|
|
(list python-jupyter-packaging))
|
|
(home-page "https://github.com/jupyter-widgets/ipywidgets")
|
|
(synopsis "Interactive widgets for Jupyter Notebooks")
|
|
(description "ipywidgets, also known as jupyter-widgets or simply widgets,
|
|
are interactive HTML widgets for Jupyter notebooks and the IPython kernel.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-jupyterlite-core
|
|
(package
|
|
(name "python-jupyterlite-core")
|
|
(version "0.1.3")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "jupyterlite_core" version))
|
|
(sha256
|
|
(base32 "18ysrqlsh7a31sknfnng419r7wpx9nfj59lxxd6zl1kcj6wazh34"))))
|
|
(build-system pyproject-build-system)
|
|
(propagated-inputs (list python-doit python-jupyter-core))
|
|
(native-inputs (list python-ansi2html
|
|
python-hatchling
|
|
python-pytest-console-scripts
|
|
python-pytest-cov
|
|
python-pytest-xdist
|
|
python-tornado))
|
|
(home-page "https://github.com/jupyterlite/jupyterlite")
|
|
(synopsis "Core functionality for building JupyterLite websites")
|
|
(description "The jupyterlite-core package provides the core functionality
|
|
for building JupyterLite websites, the jupyter-lite CLI, and extension points
|
|
for authoring custom addons.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-jupyterlite-sphinx
|
|
(package
|
|
(name "python-jupyterlite-sphinx")
|
|
(version "0.9.3")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "jupyterlite_sphinx" version))
|
|
(sha256
|
|
(base32 "05h7zrvsx0xzxlddsqfz1fxdgld66yhn6nxfp4jz20wbx6csrr4v"))))
|
|
(build-system pyproject-build-system)
|
|
(arguments (list #:tests? #false)) ;there are none
|
|
(propagated-inputs (list python-docutils python-jupyter-server
|
|
python-jupyterlab-server python-jupyterlite-core
|
|
python-sphinx))
|
|
(native-inputs (list python-hatchling))
|
|
(home-page "https://github.com/jupyterlite/jupyterlite")
|
|
(synopsis "Sphinx extension for deploying JupyterLite")
|
|
(description "This package provides a Sphinx extension for deploying
|
|
@code{JupyterLite}.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-jupyter-server-mathjax
|
|
(package
|
|
(name "python-jupyter-server-mathjax")
|
|
(version "0.2.6")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "jupyter_server_mathjax" version))
|
|
(sha256
|
|
(base32 "0hrrl969r7ir6q683hlr7a4lid9x2s35hax2hviiyv38q1nnn7mv"))))
|
|
(build-system pyproject-build-system)
|
|
(arguments
|
|
(list
|
|
#:test-flags
|
|
'(list "--pyargs" "jupyter_server_mathjax")))
|
|
(propagated-inputs (list python-jupyter-server))
|
|
(native-inputs
|
|
(list python-jupyter-packaging
|
|
python-pytest python-pytest-jupyter
|
|
python-setuptools python-wheel))
|
|
(home-page "https://jupyter.org")
|
|
(synopsis "Jupyter Server extension for serving Mathjax")
|
|
(description "This package provides a Jupyter Server extension for serving
|
|
Mathjax, the JavaScript display engine for mathematics.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-comm
|
|
(package
|
|
(name "python-comm")
|
|
(version "0.2.2")
|
|
(source
|
|
(origin
|
|
(method git-fetch) ; no tests data in PyPi package
|
|
(uri (git-reference
|
|
(url "https://github.com/ipython/comm")
|
|
(commit (string-append "v" version))))
|
|
(file-name (git-file-name name version))
|
|
(sha256
|
|
(base32 "18xsbpd8dgcfbc51xl59nlwaq7jnyzvgzjfj6psscv71894x4lg7"))))
|
|
(build-system pyproject-build-system)
|
|
(native-inputs
|
|
(list python-hatchling python-pytest python-setuptools-scm))
|
|
(propagated-inputs
|
|
(list python-traitlets))
|
|
(home-page "https://github.com/ipython/comm")
|
|
(synopsis "Python Comm implementation for the Jupyter kernel protocol")
|
|
(description
|
|
"This package provides a way to register a Kernel Comm implementation, as
|
|
per the Jupyter kernel protocol. It also provides a base Comm implementation
|
|
and a default CommManager that can be used.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-nbclient
|
|
(package
|
|
(name "python-nbclient")
|
|
(version "0.10.0")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "nbclient" version))
|
|
(sha256
|
|
(base32
|
|
"02dvb9ffpd237apyj4fw97a9371kv99lzny49624j7jkp9yingsb"))))
|
|
(build-system pyproject-build-system)
|
|
;; Tests require tools from nbconvert, which would introduces a cycle.
|
|
(arguments '(#:tests? #false))
|
|
(propagated-inputs
|
|
(list python-jupyter-client python-jupyter-core python-nbformat
|
|
python-traitlets))
|
|
(native-inputs
|
|
(list python-hatchling
|
|
python-flaky
|
|
python-pytest
|
|
python-pytest-asyncio
|
|
python-pytest-cov
|
|
python-testpath
|
|
python-xmltodict))
|
|
(home-page "https://jupyter.org")
|
|
(synopsis "Client library for executing notebooks")
|
|
(description
|
|
"This package provides a client library for executing notebooks.
|
|
It was formerly known as nbconvert's @code{ExecutePreprocessor.}")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-nbdime
|
|
(package
|
|
(name "python-nbdime")
|
|
(version "4.0.2")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "nbdime" version))
|
|
(sha256
|
|
(base32 "1whvdz9i3c2f4fgy1mnvv0z88rxv6540rmi07cjhnv139f7ry9yq"))))
|
|
(build-system pyproject-build-system)
|
|
(arguments
|
|
(list
|
|
#:phases
|
|
#~(modify-phases %standard-phases
|
|
(add-before 'check 'pre-check
|
|
(lambda _
|
|
(setenv "HOME" "/tmp")
|
|
(setenv "GIT_AUTHOR_NAME" "Your Name")
|
|
(setenv "GIT_COMMITTER_NAME" "Your Name")
|
|
(setenv "GIT_AUTHOR_EMAIL" "you@example.com")
|
|
(setenv "GIT_COMMITTER_EMAIL" "you@example.com")
|
|
(invoke "git" "init")
|
|
(invoke "git" "config" "--global" "user.name" "Your Name")
|
|
(invoke "git" "config" "--global" "user.email" "you@example.com"))))))
|
|
(propagated-inputs
|
|
(list python-colorama
|
|
python-gitpython
|
|
python-jinja2
|
|
python-jupyter-server
|
|
python-jupyter-server-mathjax
|
|
python-nbformat
|
|
python-pygments
|
|
python-requests
|
|
python-tornado))
|
|
(native-inputs
|
|
(list git-minimal/pinned
|
|
python-hatch-jupyter-builder
|
|
python-hatchling
|
|
python-mock
|
|
python-pytest
|
|
python-pytest-tornado))
|
|
(home-page "https://nbdime.readthedocs.io")
|
|
(synopsis "Diff tools for Jupyter Notebooks")
|
|
(description "@code{nbdime} provides tools for diffing and merging of
|
|
Jupyter Notebooks. It includes the following commands:
|
|
@table @command
|
|
@item nbdiff compare notebooks in a terminal-friendly way
|
|
@item nbmerge three-way merge of notebooks with automatic conflict resolution
|
|
@item nbdiff-web rich rendered diff of notebooks
|
|
@item nbmerge-web web-based three-way merge tool for notebooks
|
|
nbshow present a single notebook in a terminal-friendly way
|
|
@end table")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-nbstripout
|
|
(package
|
|
(name "python-nbstripout")
|
|
(version "0.8.1")
|
|
(source (origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "nbstripout" version))
|
|
(sha256
|
|
(base32
|
|
"1c8b4fz807qlh028yi35gahwbas4pbwc1wjx3vz8v7kj9rmqpb7a"))))
|
|
(build-system pyproject-build-system)
|
|
(arguments
|
|
(list
|
|
#:test-flags
|
|
;; These tests use git.
|
|
'(list "--ignore=tests/test_git_integration.py"
|
|
;; These complain about missing files.
|
|
"--ignore=tests/test_end_to_end.py")
|
|
#:phases
|
|
#~(modify-phases %standard-phases
|
|
(add-before 'check 'set-CRAMSHELL
|
|
(lambda _
|
|
(setenv "CRAMSHELL" (which "bash")))))))
|
|
(propagated-inputs (list python-nbformat))
|
|
(native-inputs
|
|
(list python-pytest python-setuptools python-wheel))
|
|
(home-page "https://github.com/kynan/nbstripout")
|
|
(synopsis "Strips outputs from Jupyter and IPython notebooks")
|
|
(description
|
|
"This package opens a notebook, strips its output, and writes the outputless
|
|
version to the original file.")
|
|
(license license:expat)))
|
|
|
|
(define-public repo2docker
|
|
(package
|
|
(name "repo2docker")
|
|
(version "2024.07.0")
|
|
(source (origin
|
|
(method git-fetch)
|
|
(uri (git-reference
|
|
(url "https://github.com/jupyterhub/repo2docker/")
|
|
(commit version)))
|
|
(file-name (git-file-name name version))
|
|
(sha256
|
|
(base32
|
|
"1fg71bldvfiln8h91sca4bjhwk7vdh80rhf0514qk6vqpikpx4cb"))))
|
|
(outputs '("out" "doc"))
|
|
(build-system pyproject-build-system)
|
|
(arguments
|
|
(list
|
|
#:test-flags
|
|
#~(list
|
|
;; XXX: Require external tools.
|
|
"--ignore-glob=tests/base/node/*"
|
|
"--ignore-glob=tests/conda/*"
|
|
"--ignore-glob=tests/dockerfile/*"
|
|
"--ignore-glob=tests/external/*"
|
|
"--ignore=tests/unit/test_external_scripts.py"
|
|
"--ignore-glob=tests/julia/*"
|
|
"--ignore-glob=tests/nix/*"
|
|
"--ignore-glob=tests/pipfile/*"
|
|
"--ignore-glob=tests/r/*"
|
|
"--ignore=tests/unit/test_r.py"
|
|
"--ignore=tests/unit/test_app.py"
|
|
"--ignore=tests/unit/test_clone_depth.py"
|
|
"--ignore=tests/unit/test_labels.py"
|
|
;; XXX: Require network.
|
|
"--ignore=tests/unit/test_connect_url.py"
|
|
"--ignore-glob=tests/unit/contentproviders/*"
|
|
;; XXX: Require root.
|
|
"--ignore=tests/unit/test_editable.py"
|
|
"--ignore=tests/unit/test_ports.py"
|
|
"--ignore=tests/unit/test_subdir.py"
|
|
;; XXX: Require a running docker service.
|
|
"--deselect=tests/unit/test_env.py::test_env"
|
|
"--deselect=tests/unit/test_users.py::test_user"
|
|
"--deselect=tests/unit/test_volumes.py::test_volume_abspath"
|
|
"--deselect=tests/unit/test_volumes.py::test_volume_relpath")
|
|
#:phases
|
|
#~(modify-phases %standard-phases
|
|
(add-after 'patch-shebangs 'fix-install-miniforge
|
|
(lambda _
|
|
(substitute* (find-files
|
|
#$output "^(install-miniforge|install-nix|\
|
|
nix-shell-wrapper|repo2docker-entrypoint)")
|
|
(("^#!(.*)/bin/bash")
|
|
"#!/bin/bash"))
|
|
(substitute* (find-files #$output "^freeze\\.py$")
|
|
(("^#!(.*)/bin/python3")
|
|
"#!/bin/python3\n"))))
|
|
(add-after 'install 'make-doc
|
|
(lambda _
|
|
(let ((doc (string-append #$output:out "/share/doc/"
|
|
#$(package-name this-package))))
|
|
(setenv "PYTHONPATH"
|
|
(string-append (getcwd) ":"
|
|
(getenv "GUIX_PYTHONPATH")))
|
|
;; Don't treat warnings as errors.
|
|
(substitute* "docs/Makefile"
|
|
(("(SPHINXOPTS[[:blank:]]+= )-W" _ group)
|
|
group))
|
|
(with-directory-excursion "docs"
|
|
(invoke "make" "html")
|
|
(copy-recursively "build/html"
|
|
(string-append doc "/html"))))))
|
|
(add-before 'check 'patch-bash-for-tests
|
|
(lambda _
|
|
(substitute* (find-files "tests/unit" "\\.py$")
|
|
(("/bin/bash")
|
|
(which "bash"))))))))
|
|
(inputs
|
|
(list python-traitlets
|
|
python-toml
|
|
python-semver
|
|
python-ruamel.yaml
|
|
python-requests
|
|
python-json-logger
|
|
python-jinja2
|
|
python-iso8601
|
|
python-escapism
|
|
python-docker
|
|
python-chardet))
|
|
(native-inputs
|
|
(list python-entrypoints
|
|
python-myst-parser
|
|
python-pydata-sphinx-theme
|
|
python-pytest
|
|
python-requests-mock
|
|
python-recommonmark
|
|
python-setuptools
|
|
python-sphinx
|
|
python-sphinx-copybutton
|
|
python-sphinxcontrib-autoprogram
|
|
python-sphinxext-opengraph
|
|
python-sphinxext-rediraffe
|
|
python-wheel))
|
|
(home-page "https://repo2docker.readthedocs.io/en/latest/index.html#")
|
|
(synopsis "Generate docker images from repositories")
|
|
(description
|
|
"repo2docker fetches a repository (from GitHub, GitLab, Zenodo, Figshare,
|
|
Dataverse installations, a Git repository or a local directory) and builds a
|
|
container image in which the code can be executed. The image build process is
|
|
based on the configuration files found in the repository. repo2docker can be
|
|
used to explore a repository locally by building and executing the constructed
|
|
image of the repository, or as a means of building images that are pushed to a
|
|
Docker registry.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-bash-kernel
|
|
(package
|
|
(name "python-bash-kernel")
|
|
(version "0.10.0")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "bash_kernel" version))
|
|
(sha256
|
|
(base32 "1ji8bivxm1d6hx10rda4fhai57l8djyha5g7a7bx26642sja1m9f"))))
|
|
(build-system pyproject-build-system)
|
|
(arguments
|
|
(list
|
|
#:tests? #f ; No tests.
|
|
#:phases
|
|
#~(modify-phases %standard-phases
|
|
(add-after 'unpack 'bash-references
|
|
(lambda* (#:key inputs #:allow-other-keys)
|
|
(let ((bash (search-input-file inputs "bin/bash")))
|
|
(substitute* "bash_kernel/kernel.py"
|
|
(("\"bash\"")
|
|
(format #f "~s" bash))
|
|
(("\\['bash', ")
|
|
(format #f "['~a', " bash))))))
|
|
(add-after 'install 'install-kernelspec
|
|
(lambda _
|
|
(setenv "HOME" "/tmp")
|
|
(invoke "python" "-m" "bash_kernel.install"
|
|
"--prefix" #$output))))))
|
|
(native-inputs (list python-flit-core))
|
|
(inputs
|
|
(list bash)) ;must be bash with readline
|
|
(propagated-inputs
|
|
(list python-filetype
|
|
python-ipykernel
|
|
python-jupyter-client
|
|
python-pexpect))
|
|
(home-page "https://github.com/takluyver/bash_kernel")
|
|
(synopsis "Jupyter kernel for Bash")
|
|
(description "A bash shell kernel for Jupyter.")
|
|
(license license:expat)))
|
|
|
|
(define-public python-sparqlkernel
|
|
(package
|
|
(name "python-sparqlkernel")
|
|
(version "1.3.0")
|
|
(source (origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "sparqlkernel" version))
|
|
(sha256
|
|
(base32
|
|
"004v22nyi5cnpxq4fiws89p7i5wcnzv45n3n70axdd6prh6rkapx"))))
|
|
(build-system pyproject-build-system)
|
|
(arguments
|
|
(list
|
|
#:tests? #f ;no test suite
|
|
#:phases
|
|
#~(modify-phases %standard-phases
|
|
(add-after 'unpack 'no-custom-css
|
|
(lambda _
|
|
(substitute* "sparqlkernel/install.py"
|
|
(("notebook.DEFAULT_STATIC_FILES_PATH") "\"/does-not-matter\"")
|
|
(("install_custom_css\\( destd, PKGNAME \\)") ""))))
|
|
(add-after 'wrap 'install-kernelspec
|
|
(lambda _
|
|
(setenv "HOME" "/tmp")
|
|
(invoke
|
|
(string-append #$output "/bin/jupyter-sparqlkernel")
|
|
"install"
|
|
(string-append "--InstallKernelSpec.prefix=" #$output)))))))
|
|
(native-inputs (list python-setuptools))
|
|
(propagated-inputs
|
|
(list python-ipykernel
|
|
python-notebook
|
|
python-pygments
|
|
python-rdflib
|
|
python-sparqlwrapper
|
|
python-traitlets))
|
|
(home-page "https://github.com/paulovn/sparql-kernel")
|
|
(synopsis "Jupyter kernel for SPARQL")
|
|
(description
|
|
"This module installs a Jupyter kernel for SPARQL. It allows sending
|
|
queries to an SPARQL endpoint, fetching and presenting the results in a
|
|
notebook.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-ipympl
|
|
(package
|
|
(name "python-ipympl")
|
|
(version "0.9.2")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "ipympl" version))
|
|
(sha256
|
|
(base32 "12qgiy08klqb5gipm23yzh09p5g2k8ihcq2bprprdya84acw2rf8"))))
|
|
(build-system python-build-system)
|
|
(propagated-inputs
|
|
(list python-ipython
|
|
python-ipython-genutils
|
|
python-ipywidgets
|
|
python-matplotlib
|
|
python-numpy
|
|
python-pillow
|
|
python-traitlets))
|
|
(native-inputs
|
|
(list python-hatchling python-jupyter-packaging))
|
|
(home-page "https://matplotlib.org/ipympl/")
|
|
(synopsis "Matplotlib Jupyter Extension")
|
|
(description "Leveraging the Jupyter interactive widgets framework, ipympl
|
|
enables the interactive features of matplotlib in the Jupyter notebook and in
|
|
JupyterLab.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-ipydatawidgets
|
|
(package
|
|
(name "python-ipydatawidgets")
|
|
(version "4.2.0")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "ipydatawidgets" version))
|
|
(sha256
|
|
(base32 "1g65nzlsb1cipmvh9v27b22kkmzwvg8zbf32hmg1c25mb65vbr6h"))))
|
|
(build-system pyproject-build-system)
|
|
(arguments
|
|
(list
|
|
;; tests: 87 passed, 9 deselected, 12 warnings
|
|
#:test-flags
|
|
#~(list ;; Disable failing tests.
|
|
"--ignore=examples/test.ipynb"
|
|
"-k" (string-append
|
|
"not test_dataunion_constricts_widget_data"
|
|
" and not test_dataunion_widget_change_notified"
|
|
" and not test_datawidget_creation_blank_comm"
|
|
;; TODO: type object 'Widget' has no attribute '_ipython_display_'
|
|
" and not test_notification"
|
|
" and not test_manual_notification"
|
|
" and not test_sync_segment"
|
|
" and not test_hold_sync"
|
|
" and not test_hold_sync_segment"
|
|
;; OverflowError: Python integer -33 out of bounds for uint8
|
|
" and not test_dtype_coerce"))
|
|
;; XXX: Missing files when running bdist_wheel.
|
|
#:phases
|
|
#~(modify-phases %standard-phases
|
|
(replace 'build
|
|
(lambda _
|
|
(invoke "python" "setup.py" "build")))
|
|
(replace 'install
|
|
(lambda _
|
|
(invoke "python" "setup.py" "install"
|
|
(string-append "--prefix=" #$output)))))))
|
|
(propagated-inputs
|
|
(list python-ipython-genutils
|
|
python-ipywidgets
|
|
python-numpy
|
|
python-traittypes))
|
|
(native-inputs
|
|
(list python-jupyter-packaging
|
|
python-nbval
|
|
python-pytest
|
|
python-pytest-cov
|
|
python-setuptools))
|
|
(home-page "https://github.com/vidartf/ipydatawidgets")
|
|
(synopsis "Widgets to help facilitate reuse of large datasets across widgets")
|
|
(description
|
|
"This package provides a set of widgets to help facilitate reuse of large
|
|
datasets across widgets.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-papermill
|
|
(package
|
|
(name "python-papermill")
|
|
(version "2.6.0")
|
|
(source
|
|
(origin
|
|
(method git-fetch)
|
|
(uri (git-reference
|
|
(url "https://github.com/nteract/papermill")
|
|
(commit version)))
|
|
(file-name (git-file-name name version))
|
|
(sha256
|
|
(base32 "1i5zikvl9inficryqfz0v885v24pcs78cj5nzyjw0x232kxbj41p"))))
|
|
(build-system pyproject-build-system)
|
|
(arguments
|
|
(list
|
|
;; tests: 500 passed, 3 skipped, 2 deselected, 29 warnings
|
|
#:test-flags
|
|
;; Do not bother testing Azure, AWS, and Google Cloud features.
|
|
#~(list "--ignore=papermill/tests/test_abs.py"
|
|
"--ignore=papermill/tests/test_adl.py"
|
|
"--ignore=papermill/tests/test_gcs.py"
|
|
"--ignore=papermill/tests/test_s3.py"
|
|
;; AssertionError
|
|
#$@(map (lambda (test) (string-append "--deselect="
|
|
"papermill/tests/"
|
|
"test_execute.py::"
|
|
test))
|
|
(list "TestBrokenNotebook2::test"
|
|
"TestOutputFormatting::test_output_formatting")))))
|
|
(propagated-inputs (list python-aiohttp
|
|
python-ansicolors
|
|
python-click
|
|
python-entrypoints
|
|
python-nbclient
|
|
python-nbformat
|
|
python-pyyaml
|
|
python-requests
|
|
python-tenacity
|
|
python-tqdm))
|
|
(native-inputs (list python-attrs
|
|
python-notebook
|
|
python-pytest
|
|
python-pytest-env
|
|
python-pytest-mock
|
|
python-recommonmark
|
|
python-setuptools))
|
|
(home-page "https://github.com/nteract/papermill")
|
|
(synopsis "Parameterize and run Jupyter and nteract Notebooks")
|
|
(description "Papermill is a tool for parameterizing, executing, and
|
|
analyzing Jupyter Notebooks.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-qtconsole
|
|
(package
|
|
(name "python-qtconsole")
|
|
(version "5.7.0")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (pypi-uri "qtconsole" version))
|
|
(sha256
|
|
(base32 "0w9i0s70dm39cxgn3vh4wcaxdywzp9j0ac7f49q4qmggx4f3fcqd"))))
|
|
(build-system pyproject-build-system)
|
|
(arguments
|
|
(list
|
|
#:test-flags
|
|
;; All tests fail with error: This plugin does not support
|
|
;; propagateSizeHints()
|
|
#~(list "--ignore=qtconsole/tests/test_00_console_widget.py"
|
|
;; AssertionError: '<!DO[261 chars]size:12pt; font-weight:400;
|
|
;; font-style:normal;[1218 chars]tml>' != '<!DO[261
|
|
;; chars]size:9pt; font-weight:400; font-style:normal;"[1217
|
|
;; chars]tml>'Diff is 1756 characters long. Set self.maxDiff to
|
|
;; None to see it.
|
|
"-k" "not test_other_output")
|
|
#:phases
|
|
#~(modify-phases %standard-phases
|
|
(add-before 'check 'pre-check
|
|
(lambda _
|
|
(setenv "PYTEST_QT_API" "pyqt6")
|
|
(setenv "QT_LIB" "pyqt6")
|
|
(setenv "QT_QPA_PLATFORM" "offscreen")
|
|
(system "Xvfb :1 -screen 0 640x480x24 &")
|
|
(setenv "DISPLAY" ":1")
|
|
(setenv "HOME" "/tmp"))))))
|
|
(native-inputs
|
|
(list python-flaky
|
|
python-pyqt-6
|
|
python-pytest
|
|
python-pytest-asyncio
|
|
python-pytest-qt
|
|
python-setuptools
|
|
xorg-server-for-tests))
|
|
(propagated-inputs
|
|
(list python-ipykernel
|
|
python-ipython-pygments-lexers
|
|
python-jupyter-client
|
|
python-jupyter-core
|
|
python-packaging
|
|
python-pygments
|
|
python-qtpy
|
|
python-traitlets))
|
|
(home-page "https://jupyter.org")
|
|
(synopsis "Jupyter Qt console")
|
|
(description
|
|
"This package provides a Qt-based console for Jupyter with support for
|
|
rich media output.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public python-voila
|
|
(package
|
|
(name "python-voila")
|
|
(version "0.5.8")
|
|
(source
|
|
(origin
|
|
(method git-fetch) ;no tests in pypi archive
|
|
(uri (git-reference
|
|
(url "https://github.com/voila-dashboards/voila")
|
|
(commit (string-append "v" version))))
|
|
(file-name (git-file-name name version))
|
|
(sha256
|
|
(base32
|
|
"1fxw7m03iqd4bj1075mx6bspl48nj1rddi4mbs9jkziadc5yv7in"))))
|
|
(build-system pyproject-build-system)
|
|
(arguments
|
|
(list
|
|
;; Many tests depend on Node JavaScript dependencies and a running HTTP
|
|
;; server; ignore them.
|
|
#:test-flags
|
|
'(list "--ignore" "tests/app"
|
|
"--ignore" "tests/server"
|
|
;; No python3 jupyter kernel in the build environment.
|
|
"-k" "not test_execute_output")
|
|
#:phases
|
|
#~(modify-phases %standard-phases
|
|
(add-after 'unpack 'prepare-css
|
|
(lambda* (#:key inputs #:allow-other-keys)
|
|
;; FIXME: we skip the build of the JavaScript extension. We
|
|
;; hadn't built it in previous versions, because we could easily
|
|
;; get away with it, but in this version we have to patch the
|
|
;; build system.
|
|
(substitute* "pyproject.toml"
|
|
(("\"voila/labextensions/jupyterlab-preview/static/style.js\",") "")
|
|
(("\"share/jupyter/voila/themes/@jupyterlab/theme-dark-extension/index.css\"") ""))
|
|
(copy-file (assoc-ref inputs "variables.css")
|
|
"share/jupyter/voila/templates/base/static/labvariables.css")
|
|
(copy-file (assoc-ref inputs "materialcolors.css")
|
|
"share/jupyter/voila/templates/base/static/materialcolors.css")))
|
|
;; FIXME: This is likely wrong. The official wheel has very
|
|
;; different contents, which must be the result of actually running
|
|
;; jlpm and building the JavaScript packages.
|
|
(add-after 'install 'install-extensions
|
|
(lambda* (#:key inputs #:allow-other-keys)
|
|
(let ((dir (string-append #$output
|
|
"/share/jupyter/voila/labextensions/"
|
|
"@voila-dashboards/widgets-manager7")))
|
|
(mkdir-p dir)
|
|
(invoke "tar" "xf"
|
|
(assoc-ref inputs
|
|
(string-append "voila-dashboards-widgets-manager7-"
|
|
#$version ".tgz"))
|
|
"--strip-components=1" "-C" dir))
|
|
(let ((dir (string-append #$output
|
|
"/share/jupyter/voila/labextensions/"
|
|
"@voila-dashboards/widgets-manager8")))
|
|
(mkdir-p dir)
|
|
(invoke "tar" "xf"
|
|
(assoc-ref inputs
|
|
(string-append "voila-dashboards-widgets-manager8-"
|
|
#$version ".tgz"))
|
|
"--strip-components=1" "-C" dir))
|
|
(let ((dir (string-append #$output
|
|
"/share/jupyter/voila/labextensions/"
|
|
"@voila-dashboards/jupyterlab-preview")))
|
|
(mkdir-p dir)
|
|
(invoke "tar" "xf"
|
|
(assoc-ref inputs
|
|
"voila-dashboards-jupyterlab-preview-2.3.8.tgz")
|
|
"--strip-components=1" "-C" dir))))
|
|
(add-before 'check 'set-HOME
|
|
(lambda _ (setenv "HOME" "/tmp"))))))
|
|
(propagated-inputs
|
|
(list python-jupyter-client
|
|
python-jupyter-server
|
|
python-jupyterlab-server
|
|
python-nbclient
|
|
python-nbconvert
|
|
python-traitlets
|
|
python-websockets))
|
|
(native-inputs
|
|
(list python-hatchling
|
|
python-hatch-jupyter-builder
|
|
python-ipywidgets
|
|
python-matplotlib
|
|
python-mock
|
|
python-numpy
|
|
python-pandas
|
|
python-pytest
|
|
python-pytest-tornasync
|
|
python-tornado
|
|
(origin
|
|
(method url-fetch)
|
|
(uri "https://unpkg.com/@jupyterlab/apputils@3.2.8/style/materialcolors.css")
|
|
(sha256
|
|
(base32
|
|
"1kvb24r3hbhmjdiip09w9pgzv6xmjzndch279r3ppf7rkgdcgirs")))
|
|
(origin
|
|
(method url-fetch)
|
|
(uri "https://unpkg.com/@jupyterlab/theme-light-extension@3.2.8/style/variables.css")
|
|
(sha256
|
|
(base32
|
|
"1mq6pr8w1r4jb2jgav15kkmjbca0x3nfsdv7q40xai994gsw5ygi")))
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (string-append
|
|
"https://github.com/voila-dashboards/voila/releases/download/v"
|
|
version "/voila-dashboards-widgets-manager7-" version ".tgz"))
|
|
(sha256
|
|
(base32
|
|
"14fzn89nd6fnixzsy8jhz1y40z82msj5n44242zsjfxhlq8203rm")))
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (string-append
|
|
"https://github.com/voila-dashboards/voila/releases/download/v"
|
|
version "/voila-dashboards-widgets-manager8-" version ".tgz"))
|
|
(sha256
|
|
(base32
|
|
"09kdrzpiw5psdq0ybrmmav1bwbli9gb4bdg0507069sipkap1nh4")))
|
|
;; FIXME: we are not yet using this release tarball.
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (string-append
|
|
"https://github.com/voila-dashboards/voila/releases/download/v"
|
|
version "/voila-dashboards-jupyterlab-preview-2.3.8.tgz"))
|
|
(sha256
|
|
(base32
|
|
"1bj2v03183aksn0qcqvb6p6kh8p992pk0zyz1x4s2xpijyh0fxpm")))))
|
|
(home-page "https://github.com/voila-dashboards/voila")
|
|
(synopsis "Render live Jupyter notebooks with interactive widgets")
|
|
(description
|
|
"Voilà turns Jupyter notebooks into standalone web applications. Unlike
|
|
the usual HTML-converted notebooks, each user connecting to the Voilà tornado
|
|
application gets a dedicated Jupyter kernel which can execute the callbacks to
|
|
changes in Jupyter interactive widgets.")
|
|
(license license:bsd-3)))
|