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* gnu/packages/duckdb.scm (r-duckdb): Update to 1.4.2. Change-Id: I7f8c65d1e994906a27dc05610934d4136e1afa50
198 lines
7.8 KiB
Scheme
198 lines
7.8 KiB
Scheme
;;; GNU Guix --- Functional package management for GNU
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;;; Copyright © 2023, 2024 Greg Hogan <code@greghogan.com>
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;;; Copyright © 2023, 2025 Ricardo Wurmus <rekado@elephly.net>
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;;; Copyright © 2024 Felix Gruber <felgru@posteo.net>
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;;; Copyright © 2024 Nicolas Graves <ngraves@ngraves.fr>
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;;; Copyright © 2024, 2025 Ekaitz Zarraga <ekaitz@elenq.tech>
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;;; Copyright © 2024, 2025 Sharlatan Hellseher <sharlatanus@gmail.com>
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;;;
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;;; This file is part of GNU Guix.
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;;;
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;;; GNU Guix is free software; you can redistribute it and/or modify it
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;;; under the terms of the GNU General Public License as published by
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;;; the Free Software Foundation; either version 3 of the License, or (at
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;;; your option) any later version.
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;;;
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;;; GNU Guix is distributed in the hope that it will be useful, but
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;;; WITHOUT ANY WARRANTY; without even the implied warranty of
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;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;;; GNU General Public License for more details.
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;;;
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;;; You should have received a copy of the GNU General Public License
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;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
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(define-module (gnu packages duckdb)
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#:use-module ((guix licenses) #:prefix license:)
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#:use-module (guix build-system cmake)
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#:use-module (guix build-system pyproject)
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#:use-module ((guix build-system python) #:select (pypi-uri))
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#:use-module (guix build-system r)
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#:use-module (guix download)
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#:use-module (guix gexp)
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#:use-module (guix git-download)
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#:use-module (guix packages)
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#:use-module (guix utils)
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#:use-module (gnu packages)
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#:use-module (gnu packages base)
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#:use-module (gnu packages cran)
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#:use-module (gnu packages databases)
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#:use-module (gnu packages python-build)
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#:use-module (gnu packages python-science)
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#:use-module (gnu packages python-xyz)
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#:use-module (gnu packages statistics))
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;;; Commentary:
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;;;
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;;; This module contains DuckDB - an analytical in-process SQL database
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;;; management system (https://www.duckdb.org/) and it's binding in different
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;;; programming languages with other related to DuckDB packages.
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;;;
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;;; Code:
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(define-public duckdb
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(package
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(name "duckdb")
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(version "1.4.1")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/duckdb/duckdb")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32 "1vywdhn930z4aw2ljxp5mx3cfivpvv1d88kq4rhizq3c4hpq9yf3"))))
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(build-system cmake-build-system)
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(arguments
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(list
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;; TODO: Find out how to run tests, see: <.github/workflows>.
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#:tests? #f
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#:configure-flags
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#~(list "-DBUILD_EXTENSIONS=autocomplete;icu;json;parquet;tpch;"
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;; There is no git checkout from which to read the version tag.
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(string-append "-DOVERRIDE_GIT_DESCRIBE="
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"v" #$version "-0-g0123456789"))))
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(home-page "https://duckdb.org")
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(synopsis "In-process SQL OLAP database management system")
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(description
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"CLI and C/C++ source libraries for DuckDB, a relational (table-oriented)
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@acronym{DBMS, Database Management System} that supports @acronym{SQL,
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Structured Query Language}, contains a columnar-vectorized query execution
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engine, and provides transactional @acronym{ACID, Atomicity Consistency
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Isolation and Durability} guarantees via bulk-optimized @acronym{MVCC,
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Multi-Version Concurrency Control}. Data can be stored in persistent,
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single-file databases with support for secondary indexes.")
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(license license:expat)))
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;; XXX: Try to inherit from duckdb and build from source with all extensions.
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(define-public python-duckdb
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(package
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(name "python-duckdb")
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(version "1.3.2")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "duckdb" version))
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(sha256
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(base32 "1x8zb47y8lzc4w0g013sim8x9vd1h96ra3dd0bvh91y73f5dyn66"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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#:tests? #f ;FIXME: See <https://codeberg.org/guix/guix/issues/1436>.
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#:test-flags
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#~(list "--ignore=tests/slow/test_h2oai_arrow.py"
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;; Do not relay on mypy.
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"--ignore=tests/stubs/test_stubs.py"
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"-k" (string-append
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;; Don't install anything, thank you.
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"not test_install_non_existent_extension"
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;; _pybind11_conduit_v1_ not found.
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" and not test_wrap_coverage"
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;; See <https://github.com/duckdb/duckdb/issues/11961>.
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" and not test_fetchmany"
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;; See <https://github.com/duckdb/duckdb/issues/10702>.
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" and not test_connection_interrupt"
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" and not test_query_interruption"))
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#:phases
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#~(modify-phases %standard-phases
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;; Tests need this
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(add-before 'check 'set-HOME
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(lambda _ (setenv "HOME" "/tmp")))
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;; Later versions of pybind replace "_" with "const_name".
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(add-after 'unpack 'pybind-compatibility
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(lambda _
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(with-directory-excursion "src/include/duckdb_python"
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(substitute* '("python_objects.hpp"
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"pyfilesystem.hpp"
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"pybind11/conversions/pyconnection_default.hpp")
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(("const_name") "_"))))))))
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(propagated-inputs
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(list python-adbc-driver-manager))
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(native-inputs
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(list pybind11
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python-fsspec
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;; python-google-cloud-storage ;python-grpcio fails (see: guix/guix#1436)
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python-numpy
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python-pandas
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python-psutil
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;; python-pytest
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python-setuptools-scm
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python-setuptools
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python-wheel))
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(home-page "https://www.duckdb.org")
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(synopsis "DuckDB embedded database")
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(description "DuckDB is an in-process SQL OLAP database management
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system.")
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(license license:expat)))
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(define-public r-duckdb
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(package
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(name "r-duckdb")
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(version "1.4.2")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "duckdb" version))
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(sha256
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(base32 "1k2ks40mw7qviwwa53jv76bb48jxk9cfp6lrc06ripfifabd2pix"))
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;; This package bundles the duckdb sources and builds a custom variant
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;; of duckdb. I'd be happy to link it with our duckdb library instead,
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;; but it does not seem possible to do that.
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#;
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(snippet
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'(delete-file "src/duckdb.tar.xz"))))
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(properties
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'((upstream-name . "duckdb")
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(updater-extra-native-inputs . ("tzdata-for-tests"))
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;; We don't seem to need this and I don't want to package it now.
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(updater-ignored-native-inputs . ("r-dblog"))))
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(build-system r-build-system)
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(arguments (list #:tests? #false)) ;tests can time out on the build farm
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(propagated-inputs (list r-dbi))
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(native-inputs (list r-adbcdrivermanager
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r-arrow
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r-bit64
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r-callr
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r-clock
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r-dbitest
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r-dbplyr
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r-dplyr
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r-remotes
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r-rlang
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r-testthat
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r-tibble
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r-vctrs
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r-withr
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tzdata-for-tests))
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(home-page "https://r.duckdb.org/")
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(synopsis "DBI package for the DuckDB database management system")
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(description
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"The DuckDB project is an embedded analytical data management system with
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support for the Structured Query Language (SQL). This package includes all of
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DuckDB and an R Database Interface (DBI) connector.")
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(license license:expat)))
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;;;
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;;; Avoid adding new packages to the end of this file. To reduce the chances
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;;; of a merge conflict, place them above in alphabetic order.
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;;;
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