gnu: biobambam2: Update to 2.0.185.

* gnu/packages/bioinformatics.scm (biobambam2): Update to 2.0.185.

Change-Id: I462959cbdf938cc6e798132fff521645dd4a6d04

gnu/local.mk

@@ -1697,6 +1697,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/libinfinity-renew-test-certificate.patch \
   %D%/packages/patches/libjami-pkgconf.patch                    \
   %D%/packages/patches/libjami-simdutf.patch                    \
+  %D%/packages/patches/libmauss-fix-gcc-13-require-include-cstdint.patch	\
   %D%/packages/patches/libretro-dolphin-emu-data.patch		\
   %D%/packages/patches/libretro-dolphin-emu-gc-font-tool.patch  \
   %D%/packages/patches/libretro-dolphin-emu-libusb-assert.patch \

gnu/packages/bioinformatics.scm

@@ -30,6 +30,7 @@
 ;;; Copyright © 2025 nomike Postmann <nomike@nomike.com>
 ;;; Copyright © 2025 Janneke Nieuwenhuizen <janneke@gnu.org>
 ;;; Copyright © 2025 Sharlatan Hellseher <sharlatanus@gmail.com>
+;;; Copyright © 2026 Hartmut Goebel <h.goebel@crazy-compilers.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -18745,19 +18746,22 @@ contigs alone.")
 (define-public libmaus2
   (package
     (name "libmaus2")
-    (version "2.0.786")
+    (version "2.0.813")
     (source (origin
               (method git-fetch)
               (uri (git-reference
                     (url "https://gitlab.com/german.tischler/libmaus2")
-                    (commit (string-append version "-release-20210531143054"))))
+                    (commit (string-append version "-release-20221210220409"))))
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1rxakmwjcx2yq5sjh3v849f7dfw4xzc2fyzf6s28s3p95z84w564"))))
+                "1hbkp3vjykkn8vkplzxyc6vnm69rzqhnj041jgfk61wvn5r1xzw8"))
+              (patches
+               (search-patches "libmauss-fix-gcc-13-require-include-cstdint.patch"))))
     (build-system gnu-build-system)
     ;; The test suite attempts to execute ../test-driver, which does not exist.
     (arguments '(#:tests? #false))
+    (inputs (list boost))
     (propagated-inputs
      (list zlib))
     (native-inputs
@@ -18784,16 +18788,16 @@ and many lower level support classes.
 (define-public biobambam2
   (package
     (name "biobambam2")
-    (version "2.0.182")
+    (version "2.0.185")
     (source (origin
               (method git-fetch)
               (uri (git-reference
                     (url "https://gitlab.com/german.tischler/biobambam2")
-                    (commit (string-append version "-release-20210412001032"))))
+                    (commit (string-append version "-release-20221211202123"))))
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0b7w7a2a7hpkgrdn0n7hy4pilzrj82zqrh7q4bg1l0cd6bqr60m5"))))
+                "1ysj0y11wi5z9y05qhbzhd198iqv8d1fh9b5f7ky9c3dklh1nfba"))))
     (build-system gnu-build-system)
     (arguments
      ;; The test suite attempts to execute ../test-driver, which does not exist.

gnu/packages/patches/libmauss-fix-gcc-13-require-include-cstdint.patch

@@ -0,0 +1,24 @@
+From 3c272a9dc85c74de983d5b0b1ebca593aeb86a75 Mon Sep 17 00:00:00 2001
+From: Kuoi <starsareintherose@outlook.com>
+Date: Sat, 8 Feb 2025 05:23:32 +0000
+Subject: [PATCH] fix: gcc 13 require #include <cstdint>
+
+---
+ src/libmaus2/util/MemUsage.hpp | 1 +
+ 1 file changed, 1 insertion(+)
+
+diff --git a/src/libmaus2/util/MemUsage.hpp b/src/libmaus2/util/MemUsage.hpp
+index 039a64907..8181e7285 100644
+--- a/src/libmaus2/util/MemUsage.hpp
++++ b/src/libmaus2/util/MemUsage.hpp
+@@ -23,6 +23,7 @@
+ #include <fstream>
+ #include <map>
+ #include <sstream>
++#include <cstdint>
+ 
+ namespace libmaus2
+ {
+-- 
+GitLab
+