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gnu: python-jupytext: Move to jupyter.

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* gnu/packages/python-xyz.scm (python-jupytext): Move from here ...
* gnu/packages/jupyter.scm: ... to here.

Change-Id: I02697361195c0bada08122cecb2dfb16598595cd
This commit is contained in:
Sharlatan Hellseher 2025-12-18 22:05:03 +00:00
parent 011e027da5
commit fdb8bdc689
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2 changed files with 70 additions and 66 deletions
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71
gnu/packages/jupyter.scm
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@ -11,9 +11,14 @@
;;; Copyright © 2021 Lars-Dominik Braun <lars@6xq.net>
;;; Copyright © 2021 Nicolas Goaziou <mail@nicolasgoaziou.fr>
;;; Copyright © 2021, 2022 Marius Bakke <marius@gnu.org>
;;; Copyright © 2022 Maxim Cournoyer <maxim.cournoyer@gmail.com>
;;; Copyright © 2022 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
;;; Copyright © 2022, 2024 Maxim Cournoyer <maxim.cournoyer@gmail.com>
;;; Copyright © 2023 Antero Mejr <antero@mailbox.org>
;;; Copyright © 2023 Greg Hogan <code@greghogan.com>
;;; Copyright © 2024 Danny Milosavljevic <dannym@friendly-machines.com>
;;; Copyright © 2024 Nicolas Graves <ngraves@ngraves.fr>
;;; Copyright © 2024-2025 Sharlatan Hellseher <sharlatanus@gmail.com>
;;; Copyright © 2025 Ghislain Vaillant <ghislain.vaillant@inria.fr>
;;;
;;; This file is part of GNU Guix.
;;;
@ -198,6 +203,70 @@ simulation, statistical modeling, machine learning and much more.")
(modify-inputs (package-propagated-inputs parent)
(replace "python-jupyter-client" python-jupyter-client-bootstrap)))))))
(define-public python-jupytext
(package
(name "python-jupytext")
(version "1.18.1")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/mwouts/jupytext")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "01vvi5aab7lahj57ng5v4svjw18xrlgnasz877lqvdf4m6cpi8s9"))))
(build-system pyproject-build-system)
(arguments
(list
;; tests: 4017 passed, 173 skipped, 2 deselected, 1 warning
#:test-flags
#~(list
;; Requires git.
"--ignore=tests/external"
;; Requires python-black.
"--ignore=tests/functional/contents_manager"
;; Failed: DID NOT RAISE <class 'ValueError'>.
(string-append "--deselect=tests/functional/cli/test_source_is_newer.py"
"::test_check_source_is_newer_when_using_jupytext_to")
;; Failed: DID NOT RAISE <class 'jupytext.cli.SynchronousModificationError'>.
(string-append "--deselect=tests/functional/cli/test_synchronous_changes.py"
"::test_jupytext_to_raises_on_synchronous_edits"))
#:phases
#~(modify-phases %standard-phases
(add-before 'check 'pre-check
(lambda _
;; some tests fail when HOME=/homeless-shelter.
(setenv "HOME" "/tmp")
;; OSError: [Errno 18] Invalid cross-device link
(setenv "TMPDIR" "/tmp"))))))
(native-inputs
(list python-hatchling
python-jupyter-client
python-jupyter-server
python-pytest
python-pytest-asyncio))
(propagated-inputs
(list python-markdown-it-py
python-mdit-py-plugins
python-nbformat
python-packaging
python-pyyaml))
(home-page "https://jupytext.readthedocs.io/")
(synopsis
"Jupyter notebooks as Markdown documents, Julia, Python or R scripts")
(description
"Jupytext is a plugin for Jupyter that can save Jupyter notebooks as
either Markdown files or scripts in many languages. Common use cases for
Jupytext are:
@itemize
@item version control on Jupyter Notebooks
@item editing, merging or refactoring notebooks in your favorite text editor
@item applying Q&A checks on notebooks.
@end itemize ")
(license license:expat)))
(define-public python-nbclassic
(package
(name "python-nbclassic")

65
gnu/packages/python-xyz.scm
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@ -2374,71 +2374,6 @@ asynchronous one follows
design}.")
(license license:asl2.0)))
(define-public python-jupytext
(package
(name "python-jupytext")
(version "1.18.1")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/mwouts/jupytext")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "01vvi5aab7lahj57ng5v4svjw18xrlgnasz877lqvdf4m6cpi8s9"))))
(build-system pyproject-build-system)
(arguments
(list
;; tests: 4017 passed, 173 skipped, 2 deselected, 1 warning
#:test-flags
#~(list
;; Requires git.
"--ignore=tests/external"
;; Requires python-black.
"--ignore=tests/functional/contents_manager"
;; Failed: DID NOT RAISE <class 'ValueError'>.
(string-append "--deselect=tests/functional/cli/test_source_is_newer.py"
"::test_check_source_is_newer_when_using_jupytext_to")
;; Failed: DID NOT RAISE <class 'jupytext.cli.SynchronousModificationError'>.
(string-append "--deselect=tests/functional/cli/test_synchronous_changes.py"
"::test_jupytext_to_raises_on_synchronous_edits"))
#:phases
#~(modify-phases %standard-phases
(add-before 'check 'pre-check
(lambda _
;; some tests fail when HOME=/homeless-shelter.
(setenv "HOME" "/tmp")
;; OSError: [Errno 18] Invalid cross-device link
(setenv "TMPDIR" "/tmp"))))))
(native-inputs
(list python-hatchling
python-jupyter-client
python-jupyter-server
python-pytest
python-pytest-asyncio))
(propagated-inputs
(list python-markdown-it-py
python-mdit-py-plugins
python-nbformat
python-packaging
python-pyyaml))
(home-page "https://jupytext.readthedocs.io/")
(synopsis
"Jupyter notebooks as Markdown documents, Julia, Python or R scripts")
(description
"Jupytext is a plugin for Jupyter that can save Jupyter notebooks as
either Markdown files or scripts in many languages. Common use cases for
Jupytext are:
@itemize
@item version control on Jupyter Notebooks
@item editing, merging or refactoring notebooks in your favorite text editor
@item applying Q&A checks on notebooks.
@end itemize
")
(license license:expat)))
(define-public python-concurrent-log-handler
(package
(name "python-concurrent-log-handler")