From d8d9e51a1f65c47502b73f557e28941ceeae11b2 Mon Sep 17 00:00:00 2001 From: David Elsing Date: Tue, 29 Jul 2025 16:19:32 +0200 Subject: [PATCH] gnu: freesasa: Fix build with newer gemmi. * gnu/packages/chemistry.scm (freesasa)[arguments]: Add 'fix-new-gemmi phase. Change-Id: I78997047eba8245a2d275af5ab18d0d0fe48630f Signed-off-by: Sharlatan Hellseher --- gnu/packages/chemistry.scm | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/gnu/packages/chemistry.scm b/gnu/packages/chemistry.scm index f70434b2328..9ee72804071 100644 --- a/gnu/packages/chemistry.scm +++ b/gnu/packages/chemistry.scm @@ -1136,6 +1136,12 @@ It can be used for working with (string-append "AM_PROG_LIBTOOL\n" inst))) (substitute* "tests/Makefile.am" (("libfreesasa\\.a") "libfreesasa.la")))) + (add-after 'unpack 'fix-new-gemmi + (lambda _ + (substitute* "src/cif.cc" + (("models\\[i\\]\\.name") + "std::to_string(models[i].num)") + (("convert_pair_to_loop") "ensure_loop")))) (add-before 'build 'build-lexer-and-parser (lambda _ (with-directory-excursion "src"