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gnu: elpa: Update to 2025.06.001.
* gnu/packages/maths.scm (elpa): Update to 2025.06.001. [source]: Switch to ‘git-fetch’. [native-inputs]: Add Autotools and Python; remove labels. [inputs]: Remove labels. [arguments]: Use gexps. [properties]: New field. (elpa-openmpi): Use ‘package/inherit’. [inputs]: Remove labels. [arguments]: Use gexps. Change-Id: Ie12fa7242e15779e8dd3965822f7699f6078e39a Signed-off-by: Ludovic Courtès <ludo@gnu.org> Merges: #5475
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Ludovic Courtès
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1 changed files with 85 additions and 74 deletions
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@ -12,7 +12,7 @@
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;;; Copyright © 2015 Fabian Harfert <fhmgufs@web.de>
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;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
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;;; Copyright © 2016, 2018, 2020, 2021 Kei Kebreau <kkebreau@posteo.net>
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;;; Copyright © 2016-2025 Ludovic Courtès <ludo@gnu.org>
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;;; Copyright © 2016-2026 Ludovic Courtès <ludo@gnu.org>
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;;; Copyright © 2016 Leo Famulari <leo@famulari.name>
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;;; Copyright © 2016, 2017 Thomas Danckaert <post@thomasdanckaert.be>
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;;; Copyright © 2017, 2018, 2019, 2020, 2021 Paul Garlick <pgarlick@tourbillion-technology.com>
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@ -8705,92 +8705,103 @@ theories} (SMT) solver. It provides a C/C++ API, as well as Python bindings.")
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(define-public elpa
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(package
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(name "elpa")
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(version "2018.11.001")
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(source (origin
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(method url-fetch)
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(uri (string-append "https://elpa.mpcdf.mpg.de/software/"
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"tarball-archive/Releases/"
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version "/elpa-" version ".tar.gz"))
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(sha256
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(base32
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"05hv3v5i6xmziaizw350ff72y1c3k662r85fm3xfdrkclj5zw9yc"))))
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(version "2025.06.001")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://gitlab.mpcdf.mpg.de/elpa/elpa")
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(commit (string-append "new_release_" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32 "1j2mqa8g76z6xmwji99320v6q98p823glvxjsdcdpaji59wgvdql"))))
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(build-system gnu-build-system)
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(native-inputs
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`(("fortran" ,gfortran)
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("perl" ,perl))) ;for configure and deps
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(inputs
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`(("blas" ,openblas)))
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(arguments
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`(#:configure-flags
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`("--enable-openmp"
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"--with-mpi=no"
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;; ELPA unfortunately does not support runtime dispatch, so we can
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;; only enable the "generic" kernels. See the "Cross compilation"
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;; section of INSTALL.md.
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"--enable-generic"
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"--disable-sse" "--disable-sse-assembly" ;Require SSE3
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"--disable-avx" "--disable-avx2" "--disable-avx512"
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,(string-append "CFLAGS=-O3 "
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"-funsafe-loop-optimizations -funsafe-math-optimizations "
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"-ftree-vect-loop-version -ftree-vectorize "
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,(let ((system (or (%current-target-system)
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(%current-system))))
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(cond
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((or (string-prefix? "x86_64" system)
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(string-prefix? "i686" system))
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"-msse2")
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(else "")))))
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#:parallel-tests? #f ;tests are multi-threaded, via BLAS
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#:phases
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(modify-phases %standard-phases
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(add-before 'configure 'patch-header-generation
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(lambda _
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(substitute* "configure"
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(("^ *make.*top_srcdir=\"\\$srcdir\"" &)
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(string-append & " CPP=\"$CPP\"")))
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#t))
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(add-before 'check 'setup-tests
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(lambda _
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;; Decrease test time and RAM use by computing fewer eigenvalues.
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;; The flags are (MATRIX-SIZE, EIGENVALUES, BLOCK-SIZE), where
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;; the default is (500, 250, 16) for C tests and (5000, 150, 16)
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;; for Fortran. This also causes several tests to pass that
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;; otherwise would otherwise fail with matrix size 5000; possibly
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;; due to floating point tolerances that are too tight.
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(setenv "TEST_FLAGS" "1500 50 16") ;from elpa.spec
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(setenv "OMP_NUM_THREADS" (number->string (parallel-job-count)))
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(substitute* "Makefile"
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;; Test scripts are generated, patch the shebang
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(("#!/bin/bash") (string-append "#!" (which "sh"))))
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#t)))))
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(list #:configure-flags
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#~`("--enable-openmp" "--with-mpi=no"
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;; ELPA unfortunately does not support runtime dispatch, so we
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;; can only enable the "generic" kernels. See the "Cross
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;; compilation" section of INSTALL.md.
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"--enable-generic-kernels"
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"--disable-sse"
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"--disable-sse-assembly" ;Require SSE3
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"--disable-avx"
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"--disable-avx2"
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"--disable-avx512"
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#$(string-append "CFLAGS=-O3 -funsafe-loop-optimizations "
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"-funsafe-math-optimizations "
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"-ftree-vect-loop-version -ftree-vectorize "
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(let ((system (or (%current-target-system)
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(%current-system))))
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(cond
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((or (string-prefix? "x86_64" system)
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(string-prefix? "i686" system))
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"-msse2")
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(else "")))))
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#:parallel-tests? #f ;tests are multi-threaded, via BLAS
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#:phases
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#~(modify-phases %standard-phases
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(add-before 'bootstrap 'patch-shebangs-early
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(lambda _
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(patch-shebang "generate_automake_test_programs.py")))
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(add-before 'configure 'patch-header-generation
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(lambda _
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(substitute* "configure"
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(("^ *make.*top_srcdir=\"\\$srcdir\"" &)
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(string-append & " CPP=\"$CPP\""))) #t))
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(add-before 'check 'setup-tests
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(lambda _
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;; Decrease test time and RAM use by computing fewer
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;; eigenvalues. The flags are (MATRIX-SIZE, EIGENVALUES,
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;; BLOCK-SIZE), where the default is (500, 250, 16) for C
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;; tests and (5000, 150, 16) for Fortran. This also causes
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;; several tests to pass that otherwise would otherwise
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;; fail with matrix size 5000; possibly due to floating
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;; point tolerances that are too tight.
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(setenv "TEST_FLAGS" "1500 50 16") ;from elpa.spec
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(setenv "OMP_NUM_THREADS"
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(number->string (parallel-job-count)))
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(substitute* "Makefile"
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;; Test scripts are generated, patch the shebang
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(("#!/bin/bash")
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(string-append "#!" (which "sh")))))))))
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(native-inputs
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(list autoconf-2.71
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automake
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libtool
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gfortran
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perl
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python))
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(inputs (list openblas))
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(home-page "https://elpa.mpcdf.mpg.de")
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(synopsis "Eigenvalue solvers for symmetric matrices")
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(description
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"The ELPA library provides efficient and scalable direct eigensolvers for
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symmetric matrices.")
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(license license:lgpl3)))
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(license license:lgpl3)
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(properties '((tunable? . #t)))))
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(define-public elpa-openmpi
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(package (inherit elpa)
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(package/inherit elpa
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(name "elpa-openmpi")
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(inputs
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`(("mpi" ,openmpi)
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("scalapack" ,scalapack)
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,@(package-inputs elpa)))
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(modify-inputs (package-inputs elpa)
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(prepend openmpi scalapack zlib)))
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(arguments
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(substitute-keyword-arguments (package-arguments elpa)
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((#:configure-flags cf '())
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`(cons "--with-mpi=yes" (delete "--with-mpi=no" ,cf)))
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((#:phases phases '%standard-phases)
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`(modify-phases ,phases
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(add-before 'check 'mpi-setup
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(lambda _
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;; Tests use 2 mpi tasks by default, use our remaining build
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;; cores as OpenMP threads.
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(setenv "OMP_NUM_THREADS" (number->string
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(max (quotient (parallel-job-count) 2)
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1)))
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(,%openmpi-setup)))))))
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((#:configure-flags cf #~())
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#~(cons "--with-mpi=yes"
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(delete "--with-mpi=no" #$cf)))
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((#:phases phases #~%standard-phases)
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#~(modify-phases #$phases
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(add-before 'check 'mpi-setup
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(lambda _
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;; Tests use 2 mpi tasks by default, use our remaining build
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;; cores as OpenMP threads.
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(setenv "OMP_NUM_THREADS"
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(number->string (max (quotient (parallel-job-count) 2)
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1)))
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(#$%openmpi-setup)))))))
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(synopsis "Eigenvalue solvers for symmetric matrices (with MPI support)")))
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(define-public elemental
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