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gnu: Remove atlas.
* gnu/packages/maths.scm (atlas): Delete variable. The package does not build anymore. Its last release dates from 2016. After the removal of shogun there are no other dependent packages. Change-Id: Ibe988d33451b63ef7680b6c0a19cff6430a42a68
This commit is contained in:
Andreas Enge
parent
4b4289d9a9
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b3a5bd2ce5
1 changed files with 0 additions and 129 deletions
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@ -7042,135 +7042,6 @@ This package contains all of the above-mentioned parts.
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;; GPUQREngine, RBio, SuiteSparse_GPURuntime, SuiteSparseQR, UMFPACK
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(license (list license:gpl2+ license:lgpl2.1+))))
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(define-public atlas
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(package
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(name "atlas")
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(version "3.10.3")
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(source (origin
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(method url-fetch)
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(uri (string-append "mirror://sourceforge/math-atlas/Stable/"
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version "/atlas" version ".tar.bz2"))
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(patches (search-patches "atlas-gfortran-compat.patch"))
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(sha256
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(base32
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"1dyjlq3fiparvm8ypwk6rsmjzmnwk81l88gkishphpvc79ryp216"))))
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(build-system gnu-build-system)
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(home-page "https://math-atlas.sourceforge.net/")
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(inputs `(("gfortran" ,gfortran)
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("lapack-tar" ,(package-source lapack))))
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(outputs '("out" "doc"))
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;; For the moment we drop support for MIPS at it fails to compile. See
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;; https://lists.gnu.org/archive/html/guix-devel/2014-11/msg00516.html
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(supported-systems (delete "mips64el-linux" %supported-systems))
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(arguments
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`(#:parallel-build? #f
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#:parallel-tests? #f
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;; ATLAS tunes itself for the machine it is built on, as explained at
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;; <http://lists.gnu.org/archive/html/guix-devel/2014-10/msg00305.html>.
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;; For this reason, we want users to build it locally instead of using
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;; substitutes.
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#:substitutable? #f
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#:modules ((srfi srfi-26)
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(guix build gnu-build-system)
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(guix build utils))
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#:configure-flags
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`(;; Generate position independent code suitable for dynamic libraries
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;; and use WALL timer to get more accurate timing.
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"-Fa" "alg" "-fPIC" "-D" "c" "-DWALL"
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;; Set word width.
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"-b"
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,,(if (string-match "64" (%current-system))
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"64"
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"32")
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;; Disable parallel build as it gives errors: atlas_pthread.h is
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;; needed to compile C files before it is generated.
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"-Ss" "pmake" "make -j 1"
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;; Probe is failing for MIPS. We therefore define the system
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;; architecture explicitly by setting (-A) MACHINETYPE = 49
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;; 'MIPSR1xK' and (-V) ISA = 1 'none'.
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,,@(if (string-prefix? "mips" (%current-system))
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(list "-A" "49" "-V" "1")
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(list))
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;; Generate shared libraries.
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"--shared"
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;; Build a full LAPACK library.
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,(string-append "--with-netlib-lapack-tarfile="
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(assoc-ref %build-inputs "lapack-tar")))
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#:phases
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(modify-phases %standard-phases
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(add-after 'install 'install-doc
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(lambda* (#:key outputs inputs #:allow-other-keys)
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(let ((doc (string-append (assoc-ref outputs "doc")
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"/share/doc/atlas")))
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(mkdir-p doc)
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(for-each (cut install-file <> doc)
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(find-files "../ATLAS/doc" ".*"))
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#t)))
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(add-after 'check 'check-pt
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(lambda _ (invoke "make" "ptcheck")))
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;; Fix files required to run configure.
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(add-before 'configure 'fix-/bin/sh
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(lambda _
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;; Use `sh', not `/bin/sh'.
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(substitute* (find-files "." "Makefile|configure|SpewMakeInc\\.c")
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(("/bin/sh")
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"sh"))
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#t))
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;; Fix /bin/sh in generated make files.
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(add-after 'configure 'fix-/bin/sh-in-generated-files
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(lambda _
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(substitute* (find-files "." "^[Mm]ake\\.inc.*")
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(("/bin/sh")
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"sh"))
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#t))
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;; ATLAS configure program does not accepts the default flags
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;; passed by the 'gnu-build-system'.
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(replace 'configure
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(lambda* (#:key native-inputs inputs outputs
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(configure-flags '())
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#:allow-other-keys #:rest args)
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(let* ((prefix (assoc-ref outputs "out"))
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(bash (or (and=> (assoc-ref
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(or native-inputs inputs) "bash")
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(cut string-append <> "/bin/bash"))
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"/bin/sh"))
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(flags `(,(string-append "--prefix=" prefix)
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,@configure-flags))
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(abs-srcdir (getcwd))
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(srcdir (string-append "../" (basename abs-srcdir))))
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(format #t "source directory: ~s (relative from build: ~s)~%"
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abs-srcdir srcdir)
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(mkdir "../build")
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(chdir "../build")
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(format #t "build directory: ~s~%" (getcwd))
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(format #t "configure flags: ~s~%" flags)
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(apply invoke bash
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(string-append srcdir "/configure")
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flags)))))))
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(synopsis "Automatically Tuned Linear Algebra Software")
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(description
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"ATLAS is an automatically tuned linear algebra software library
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providing C and Fortran77 interfaces to a portably efficient BLAS
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implementation, as well as a few routines from LAPACK.
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Optimization occurs at build time. For this reason, the library is built on
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the machine where it is installed, without resorting to pre-built substitutes.
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Before building the library, CPU throttling should be disabled. This can be
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done in the BIOS, or, on GNU/Linux, with the following command:
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@example
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# cpupower --governor performance
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@end example
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Failure to do so will result in a library with poor performance.")
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;; The test suite is notoriously lengthy and routinely exceeds the default
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;; timeout of 21600 seconds on the not unbeefy berlin build nodes.
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(properties '((timeout . 86400))) ; 1 day
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(license license:bsd-3)))
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(define-public cglm
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(package
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(name "cglm")
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