bartronx7/guix
1
0
Fork 0
mirror of https://codeberg.org/guix/guix.git synced 2026-01-25 12:05:19 -06:00
Code Issues Projects Releases Packages Wiki Activity Actions

gnu: stpipeline: Run guix style

Browse source 
* gnu/packages/bioinformatics.scm (stpipeline): Run guix style.

Change-Id: I341e0b7adce82c079b1dcff94a2128d3e1773a4a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
This commit is contained in:
Kjartan Oli Agustsson 2025-06-18 21:03:25 +00:00 • committed by Sharlatan Hellseher
parent 3bb992a357
commit abeb7cd9fa
No known key found for this signature in database
GPG key ID: 76D727BFF62CD2B5
1 changed files with 29 additions and 32 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

61
gnu/packages/bioinformatics.scm
View file

@ -11960,41 +11960,38 @@ for Spatial Transcriptomics data.")
(package
(name "stpipeline")
(version "1.8.1")
(source (origin
(method url-fetch)
(uri (pypi-uri "stpipeline" version))
(sha256
(base32
"0har2g42fvaqpiz66lincy86aj1hvwzds26kxhxfamvyvv4721wk"))))
(source
(origin
(method url-fetch)
(uri (pypi-uri "stpipeline" version))
(sha256
(base32 "0har2g42fvaqpiz66lincy86aj1hvwzds26kxhxfamvyvv4721wk"))))
(build-system pyproject-build-system)
(arguments
(list
#:phases
'(modify-phases %standard-phases
(add-after 'unpack 'relax-requirements
(lambda _
(substitute* "requirements.txt"
(("argparse.*") "")))))))
(propagated-inputs
(list htseq
python-cython
python-invoke
python-numpy
python-pandas
python-pympler
python-pysam
python-regex
python-scikit-learn
python-scipy
python-seaborn
python-setuptools
python-sqlitedict
python-taggd
samtools
star))
(native-inputs
(list python-setuptools
python-wheel))
#:phases '(modify-phases %standard-phases
(add-after 'unpack 'relax-requirements
(lambda _
(substitute* "requirements.txt"
(("argparse.*")
"")))))))
(propagated-inputs (list htseq
python-cython
python-invoke
python-numpy
python-pandas
python-pympler
python-pysam
python-regex
python-scikit-learn
python-scipy
python-seaborn
python-setuptools
python-sqlitedict
python-taggd
samtools
star))
(native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/SpatialTranscriptomicsResearch/st_pipeline")
(synopsis "Pipeline for spatial mapping of unique transcripts")
(description