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gnu: python-deeptools: Update to 3.5.6.

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* gnu/packages/bioinformatics.scm (python-deeptools): Update to 3.5.6.
[arguments] <test-flags>: Skip one test.
<phases>: Remove 'fix-test.
[native-inputs]: Remove python-wheel.

Change-Id: I233b272ee06ab6c290c11a6875961de0fe52b8e8
This commit is contained in:
Sharlatan Hellseher 2026-01-03 01:45:35 +00:00 • committed by Andreas Enge
parent 6f4ed682c7
commit a00320576e
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GPG key ID: F7D5C9BF765C61E3
1 changed files with 10 additions and 16 deletions
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gnu/packages/bioinformatics.scm
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@ -6562,7 +6562,7 @@ interval trees with associated meta-data. It is primarily used by the
(define-public python-deeptools
(package
(name "python-deeptools")
(version "3.5.5")
(version "3.5.6")
(source (origin
(method git-fetch)
(uri (git-reference
@ -6571,25 +6571,19 @@ interval trees with associated meta-data. It is primarily used by the
(file-name (git-file-name name version))
(sha256
(base32
"0mgcs03amrd5157drbm6ikdg0m0szrn9xbflariz2zrrnqpsai6s"))))
"0npdcqlbcxwzkadz9j6yqzk7snl6758gn3lnff9845x3ycxfa5bp"))))
(build-system pyproject-build-system)
(arguments
(list
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'fix-test
(lambda _
(substitute* "deeptools/test/test_tools.py"
(("e_ver = _p")
"e_ver = \".\" + _p + \"-real\""))
(substitute* "deeptools/multiBigwigSummary.py"
(("version='multiBigwigSummary")
"version='%(prog)s"))
(substitute* "deeptools/plotCoverage.py"
(("version='plotCoverage")
"version='%(prog)s")))))))
;; tests: 99 passed, 1 deselected
#:test-flags
;; AssertionError: assert '.alignmentSieve-real 3.5.6' ==
;; 'alignmentSieve 3.5.6'
#~(list "--deselect=deeptools/test/test_tools.py::test_tools")))
(native-inputs
(list python-mock python-pytest python-setuptools python-wheel))
(list python-mock
python-pytest
python-setuptools))
(propagated-inputs
(list python-matplotlib
python-numpy