From 901020cdebaa6923e5c3322e41543acc85da8ca4 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Sat, 10 May 2025 21:41:58 +0200
Subject: [PATCH] gnu: pigx-scrnaseq: Use Snakemake 5.

* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace snakemake-7
with snakemake-5.
[arguments]: Set HOME.

Change-Id: I45257e138c4cf468d179ff35b0c705bc73046052
---
 gnu/packages/bioinformatics.scm | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index da927ebcc62..7995aaab1b7 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -18310,6 +18310,8 @@ methylation and segmentation.")
       '(modify-phases %standard-phases
          (add-before 'configure 'set-additional-environment-variables
            (lambda _
+             ;; Needed for tests
+             (setenv "HOME" "/tmp")
              ;; Needed because of loompy
              (setenv "NUMBA_CACHE_DIR" "/tmp")
              ;; Needed to capture environment
@@ -18329,7 +18331,7 @@ methylation and segmentation.")
            python-loompy
            pandoc
            samtools
-           snakemake-7
+           snakemake-5
            star-for-pigx
            r-minimal
            r-argparser