From 84004ebc6326bfb722835e5bdedfdbafea3f0a4e Mon Sep 17 00:00:00 2001
From: Nicolas Graves <ngraves@ngraves.fr>
Date: Tue, 6 Jan 2026 23:55:06 +0100
Subject: [PATCH] gnu: python-pypairix: Fix package.

The package was missing binaries, which were not produced because
CFLAGS were effectively ignored.

* gnu/packages/bioinformatics.scm (python-pypairix)[arguments]
<#:phases>: Add phase 'respect-CFLAGS.

Change-Id: Id982af5f5a0c43c6fc20e109a5419913e47882e9
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
---
 gnu/packages/bioinformatics.scm | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5392e2c4e82..e1ec20e387d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -20246,6 +20246,11 @@ allowing the insertion of arbitrary types into the tree.")
      (list
       #:phases
       #~(modify-phases %standard-phases
+          (add-after 'unpack 'respect-CFLAGS
+            (lambda _
+              (substitute* "src/Makefile"
+                (("CFLAGS=")
+                 "CFLAGS?="))))
           (add-before 'build 'relax-gcc-14-strictness
             (lambda _
               (setenv "CFLAGS"