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gnu: python-lifelines: Compute parallel tests.

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* gnu/packages/statistics.scm (python-lifelines)[native-inputs]: Add
python-pytest-xdist.
[arguments]: Add --numprocesses flag to #:test-flags, and remove very
slow tests.

Change-Id: Ib2ecc8bec37d9a7f95f992d8af160283b5abe881
This commit is contained in:
Cayetano Santos 2025-12-08 10:58:19 +01:00
parent 243bc42768
commit 75016a2ee8
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GPG key ID: BF5CDF4DF6BF6682
1 changed files with 16 additions and 5 deletions
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21
gnu/packages/statistics.scm
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@ -1313,16 +1313,27 @@ new data from those PDFs.")
(list
#:test-flags
;; NOTE: Tests take 15-25min to complete on 16 threads and much longer
;; in single one, consider to try enabling --numprocesses option.
#~(list ;; "--numprocesses" (number->string (parallel-job-count))
;; This accuracy test fails because 0.012 is not < 0.01.
"-k" "not test_weibull_with_delayed_entries")))
;; in single one, so enabling --numprocesses option.
#~(list "lifelines/tests"
"--numprocesses" (number->string (min 16 (parallel-job-count)))
"-k" (string-join
(list
;; This accuracy test fails because 0.012 is not < 0.01.
"not test_weibull_with_delayed_entries"
;; These checks are too expensive, last for ages.
"test_univariate_fitters_ok_if_given_timedelta"
"test_predict_methods_returns_a_scalar_or_a_array_depending_on_input"
"test_cumulative_density_ci_is_ordered_correctly"
(string-append
"test_univariate_fitters_okay_if_"
"given_boolean_col_with_object_dtype"))
" and not "))))
(native-inputs
(list python-dill
python-flaky
python-joblib
python-pytest
;; python-pytest-xdist
python-pytest-xdist ;see NOTE above
python-setuptools
python-wheel))
(propagated-inputs