diff --git a/gnu/packages/irods.scm b/gnu/packages/irods.scm index e955c353a0b..08f4773cc63 100644 --- a/gnu/packages/irods.scm +++ b/gnu/packages/irods.scm @@ -43,125 +43,3 @@ #:use-module (gnu packages serialization) #:use-module (gnu packages tls) #:use-module (srfi srfi-1)) - -(define-public irods - (package - (name "irods") - (version "4.2.8") - (source (origin - (method url-fetch) - (uri (string-append "https://github.com/irods/irods/releases/download/" - version "/irods-" version ".tar.gz")) - (sha256 - (base32 - "0ny54c3r0j692rvbr4iibg7xgd2i7g9x8yyrw04j889bywix14rc")))) - (build-system cmake-build-system) - (arguments - `(#:configure-flags - (list - "-DCMAKE_BUILD_TYPE=Release" - (string-append "-DCMAKE_MODULE_LINKER_FLAGS=-Wl,-rpath=" - (assoc-ref %outputs "out") "/lib") - (string-append "-DCMAKE_SHARED_LINKER_FLAGS=-Wl,-rpath=" - (assoc-ref %outputs "out") "/lib") - (string-append "-DCMAKE_EXE_LINKER_FLAGS=-Wl,-rpath=" - (assoc-ref %outputs "out") "/lib") - - ;; Configuration aborts if no generator format is set - "-DCPACK_GENERATOR=TGZ" - - ;; Configuration attempts to guess the distribution with Python. - "-DIRODS_LINUX_DISTRIBUTION_NAME=guix" - "-DIRODS_LINUX_DISTRIBUTION_VERSION_MAJOR=1" - - (string-append "-DIRODS_EXTERNALS_FULLPATH_CLANG=" - (assoc-ref %build-inputs "clang")) - (string-append "-DIRODS_EXTERNALS_FULLPATH_CLANG_RUNTIME=" - (assoc-ref %build-inputs "clang-runtime")) - (string-append "-DIRODS_EXTERNALS_FULLPATH_CPPZMQ=" - (assoc-ref %build-inputs "cppzmq")) - (string-append "-DIRODS_EXTERNALS_FULLPATH_ARCHIVE=" - (assoc-ref %build-inputs "libarchive")) - (string-append "-DIRODS_EXTERNALS_FULLPATH_AVRO=" - (assoc-ref %build-inputs "avro-cpp")) - (string-append "-DIRODS_EXTERNALS_FULLPATH_BOOST=" - (assoc-ref %build-inputs "boost")) - (string-append "-DIRODS_EXTERNALS_FULLPATH_ZMQ=" - (assoc-ref %build-inputs "zeromq")) - (string-append "-DIRODS_EXTERNALS_FULLPATH_JSON=" - (assoc-ref %build-inputs "json")) - (string-append "-DIRODS_EXTERNALS_FULLPATH_CATCH2=" - (assoc-ref %build-inputs "catch2")) - (string-append "-DIRODS_EXTERNALS_FULLPATH_NANODBC=" - (assoc-ref %build-inputs "nanodbc")) - (string-append "-DIRODS_EXTERNALS_FULLPATH_FMT=" - (assoc-ref %build-inputs "fmt"))) - - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'unset-Werror - (lambda _ - ;; -Werror kills the build due to a comparison REQUIRE(errs.size() == err->len); - ;; in unit_tests/src/test_irods_lifetime_manager.cpp - (substitute* "CMakeLists.txt" - (("-Werror") "")))) - (add-after 'unpack 'remove-FHS-and-prefix-assumptions - (lambda* (#:key inputs #:allow-other-keys) - (substitute* '("CMakeLists.txt" - "cmake/server.cmake" - "cmake/development_library.cmake" - "cmake/runtime_library.cmake") - (("usr/") "")) - (substitute* "lib/core/src/irods_default_paths.cpp" - (("path.append\\(\"usr\"\\)") "path") - (("path.remove_filename\\(\\).remove_filename\\(\\).remove_filename\\(\\)") - "path.remove_filename().remove_filename()")) - (substitute* "scripts/irods/paths.py" - (("'usr', 'lib', 'irods'") "'lib', 'irods'")) - (substitute* "scripts/irods/pypyodbc.py" - (("\"/usr/lib/libodbc.so\"") - (search-input-file inputs "/lib/libodbc.so"))))) - (add-after 'set-paths 'adjust-CPLUS_INCLUDE_PATH - (lambda* (#:key inputs #:allow-other-keys) - (let ((gcc (assoc-ref inputs "gcc"))) - (setenv "CPLUS_INCLUDE_PATH" - (string-join - (cons* (search-input-directory inputs "/include/c++/v1") - (search-input-directory inputs "/include/catch2") - (search-input-directory inputs "/include/nlohmann") - ;; Hide GCC's C++ headers so that they do not interfere with - ;; the Clang headers. - (delete (string-append gcc "/include/c++") - (string-split (getenv "CPLUS_INCLUDE_PATH") - #\:))) - ":")) - (format #true - "environment variable `CPLUS_INCLUDE_PATH' changed to ~a~%" - (getenv "CPLUS_INCLUDE_PATH")))))))) - (inputs - `(("avro-cpp" ,avro-cpp-1.9-for-irods) - ("boost" ,boost-for-irods) - ("cppzmq" ,cppzmq) - ("fmt" ,fmt-6) - ("json" ,nlohmann-json) - ("libarchive" ,libarchive) - ("libcxxabi" ,libcxxabi-6) ; we need this for linking with -lc++abi - ("linux-pam" ,linux-pam) - ("mit-krb5" ,mit-krb5) - ("nanodbc" ,nanodbc-for-irods) - ("openssl" ,openssl) - ("python" ,python-wrapper) - ("unixodbc" ,unixodbc) - ("zeromq" ,zeromq))) - (native-inputs - `(("catch2" ,catch2) - ("clang" ,clang-toolchain-6) - ("clang-runtime" ,clang-runtime-6) - ("libcxx+libcxxabi" ,libcxx+libcxxabi-6))) - (home-page "https://irods.org") - (synopsis "Data management software") - (description "The Integrated Rule-Oriented Data System (iRODS) is data -management software. iRODS virtualizes data storage resources, so users can -take control of their data, regardless of where and on what device the data is -stored.") - (license license:bsd-3)))