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gnu: seqmagick: Fix build and remove python-nose.

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* gnu/packages/bioinformatics.scm (seqmagick)
[arguments]<#:phases>: Add phase 'set-version.
[native-inputs]: Remove python-wheel.  Replace python-nose by
python-pynose.

Change-Id: I5a10d7702d59c6f837761ff96e11f0ff470e0626
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
This commit is contained in:
Nicolas Graves 2025-11-29 21:02:31 +01:00 • committed by Sharlatan Hellseher
parent 988d0a2f74
commit 290a91c5cb
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GPG key ID: 76D727BFF62CD2B5
1 changed files with 23 additions and 5 deletions
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28
gnu/packages/bioinformatics.scm
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@ -12056,16 +12056,34 @@ bioinformatics file formats, sequence alignment, and more.")
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/fhcrc/seqmagick")
(commit commit)))
(url "https://github.com/fhcrc/seqmagick")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "0syipb7m44s5bqrhs17bwr28svy2s83j8d93kbazav92jzszzsw4"))))
(build-system pyproject-build-system)
(inputs
(list python-biopython python-pygtrie))
(arguments
(list
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'set-version
;; Alternative of setup.py version check:
;;
;; subprocess.call(
;; ('mkdir -p seqmagick/data && '
;; 'git describe --tags --dirty > seqmagick/data/ver.tmp '
;; '&& mv seqmagick/data/ver.tmp seqmagick/data/ver '
;; '|| rm -f seqmagick/data/ver.tmp'),
;; shell=True, stderr=open(os.devnull, "w"))
;;
(lambda _
(mkdir "seqmagick/data")
(with-output-to-file "seqmagick/data/ver"
(lambda _ (display #$version))))))))
(native-inputs
(list python-nose python-setuptools python-wheel))
(list python-pynose
python-setuptools))
(inputs (list python-biopython python-pygtrie))
(home-page "https://github.com/fhcrc/seqmagick")
(synopsis "Tools for converting and modifying sequence files")
(description