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gnu: Remove vbz-compression.
* gnu/packages/bioinformatics.scm (vbz-compression): Delete variable. Fixes: guix/guix#3640 Change-Id: I996c211af44a7342cb83249c0a9347f11d324069
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@ -22207,43 +22207,6 @@ datasets to ascertain that it achieves high sensitivity and specificity in
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multiple experimental contexts.")
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(license license:expat)))
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(define-public vbz-compression
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(package
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(name "vbz-compression")
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(version "1.0.13")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/nanoporetech/vbz_compression/")
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(commit version)
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;; We include the streamvbyte sources
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(recursive? #true)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1jf5i5v0h58s7w6rhgi4w1vvxnk9jzbgmiic14d48ngr204m0w5c"))))
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(build-system cmake-build-system)
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(arguments
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`(#:configure-flags
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'("-DENABLE_CONAN=OFF"
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;; Python things aren't even installed, so we might as well
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;; disable building them.
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"-DENABLE_PYTHON=OFF")))
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(inputs
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(list ;("hdf5" ,hdf5-1.10)
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`(,zstd "lib")))
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(native-inputs
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(list googlebenchmark))
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(home-page "https://github.com/nanoporetech/vbz_compression/")
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(synopsis "VBZ compression plugin for nanopore signal data")
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(description
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"VBZ Compression uses variable byte integer encoding to compress
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nanopore signal data. The performance of VBZ is achieved by taking
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advantage of the properties of the raw signal and therefore is most
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effective when applied to the signal dataset.")
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(license license:mpl2.0)))
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(define-public tbsp
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(let ((commit "dc30c03868233c5504299c9cb0d7b2064ba9cb41")
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(revision "2"))
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