gnu: Remove r-gqtlbase.

This package has been removed from Bioconductor a while ago.  It now fails to
build because ffbase fails to build.  ffbase was removed from CRAN in 2022.

* gnu/packages/bioconductor.scm (r-gqtlbase): Remove variable.

Change-Id: I3e9c59178cc9e8e80815544815c58db253561e0a
This commit is contained in:
Ricardo Wurmus 2026-01-20 10:33:13 +01:00
parent 994f29b083
commit 181b8fccb4
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@ -26839,55 +26839,6 @@ views. High-level plots include sequence fragment length, edge-linked
interval to data view, mismatch pileup, and several splicing summaries.")
(license license:artistic2.0)))
(define-public r-gqtlbase
(package
(name "r-gqtlbase")
(version "1.21.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "gQTLBase" version))
(sha256
(base32
"0nipibm1bk9k70ajbw1f6vjmz0dh7gk21l17q3m54bnawxsggrfh"))))
(properties `((upstream-name . "gQTLBase")))
(build-system r-build-system)
(arguments
(list
;; Tests fail with "The file does not exist".
#:tests? #false
#:phases
'(modify-phases %standard-phases
;; This is an upstream bug.
(add-after 'unpack 'fix-imports
(lambda _
(substitute* "NAMESPACE"
((".*maxffmode.*") "")
(("importFrom\\(ff,.*") "import(ff)\n")))))))
(propagated-inputs
(list r-batchjobs
r-bbmisc
r-biocgenerics
r-bit
r-doparallel
r-ff
r-ffbase
r-foreach
r-genomicfiles
r-genomicranges
r-rtracklayer
r-s4vectors
r-summarizedexperiment))
(native-inputs
(list r-knitr r-runit))
(home-page "https://bioconductor.org/packages/gQTLBase")
(synopsis "Infrastructure for eQTL, mQTL and similar studies")
(description
"The purpose of this package is to simplify the storage and interrogation
of @dfn{quantitative trait loci} (QTL) archives, such as eQTL, mQTL, dsQTL,
and more.")
(license license:artistic2.0)))
(define-public r-gviz
(package
(name "r-gviz")