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gnu: Remove r-gqtlbase.
This package has been removed from Bioconductor a while ago. It now fails to build because ffbase fails to build. ffbase was removed from CRAN in 2022. * gnu/packages/bioconductor.scm (r-gqtlbase): Remove variable. Change-Id: I3e9c59178cc9e8e80815544815c58db253561e0a
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1 changed files with 0 additions and 49 deletions
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@ -26839,55 +26839,6 @@ views. High-level plots include sequence fragment length, edge-linked
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interval to data view, mismatch pileup, and several splicing summaries.")
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(license license:artistic2.0)))
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(define-public r-gqtlbase
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(package
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(name "r-gqtlbase")
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(version "1.21.1")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "gQTLBase" version))
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(sha256
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(base32
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"0nipibm1bk9k70ajbw1f6vjmz0dh7gk21l17q3m54bnawxsggrfh"))))
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(properties `((upstream-name . "gQTLBase")))
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(build-system r-build-system)
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(arguments
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(list
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;; Tests fail with "The file does not exist".
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#:tests? #false
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#:phases
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'(modify-phases %standard-phases
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;; This is an upstream bug.
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(add-after 'unpack 'fix-imports
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(lambda _
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(substitute* "NAMESPACE"
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((".*maxffmode.*") "")
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(("importFrom\\(ff,.*") "import(ff)\n")))))))
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(propagated-inputs
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(list r-batchjobs
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r-bbmisc
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r-biocgenerics
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r-bit
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r-doparallel
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r-ff
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r-ffbase
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r-foreach
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r-genomicfiles
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r-genomicranges
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r-rtracklayer
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r-s4vectors
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r-summarizedexperiment))
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(native-inputs
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(list r-knitr r-runit))
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(home-page "https://bioconductor.org/packages/gQTLBase")
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(synopsis "Infrastructure for eQTL, mQTL and similar studies")
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(description
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"The purpose of this package is to simplify the storage and interrogation
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of @dfn{quantitative trait loci} (QTL) archives, such as eQTL, mQTL, dsQTL,
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and more.")
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(license license:artistic2.0)))
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(define-public r-gviz
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(package
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(name "r-gviz")
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