From 1284549ad22d1fe78efdef0b474f04626ae35eff Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 20 Jan 2026 16:23:09 +0100 Subject: [PATCH] gnu: blast+: Add missing inputs. Some of the tools like blastp require sqlite3. * gnu/packages/bioinformatics.scm (blast+)[inputs]: Add boost-1.83 and sqlite. [arguments]: Pass --with-sqlite3 and --with-boost. Change-Id: Iff6166c3b2649b61f3bc5cb5219963e6422bb983 --- gnu/packages/bioinformatics.scm | 10 +++++++--- 1 file changed, 7 insertions(+), 3 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4ff79188c19..16242c7860a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5550,8 +5550,10 @@ package provides command line tools using the Bio++ library.") #$(this-package-input "bzip2")) (string-append "--with-z=" #$(this-package-input "zlib")) - (string-append "--with-pcre=" - #$(this-package-input "pcre")) + (string-append "--with-sqlite3=" + #$(this-package-input "sqlite")) + (string-append "--with-boost=" + #$(this-package-input "boost")) ;; Each library is built twice by default, once ;; with "-static" in its name, and again ;; without. @@ -5561,8 +5563,10 @@ package provides command line tools using the Bio++ library.") "lib" ; 226 MB "include")) ; 33 MB (inputs - (list bzip2 + (list boost-1.83 + bzip2 lmdb + sqlite zlib pcre perl